Cercocebus atys (sooty mangabey): 105601715
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Entry
105601715 CDS
T07242
Symbol
UPF1
Name
(RefSeq) regulator of nonsense transcripts 1
KO
K14326
regulator of nonsense transcripts 1 [EC:
5.6.2.5
5.6.2.3
]
Organism
caty
Cercocebus atys (sooty mangabey)
Pathway
caty03013
Nucleocytoplasmic transport
caty03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
caty00001
]
09120 Genetic Information Processing
09122 Translation
03013 Nucleocytoplasmic transport
105601715 (UPF1)
03015 mRNA surveillance pathway
105601715 (UPF1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
caty03019
]
105601715 (UPF1)
Enzymes [BR:
caty01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.3 DNA 5'-3' helicase
105601715 (UPF1)
5.6.2.5 RNA 5'-3' helicase
105601715 (UPF1)
Messenger RNA biogenesis [BR:
caty03019
]
Eukaryotic type
mRNA surveillance and transport factors
Surveillance factors
Surveillance complex
105601715 (UPF1)
mRNA cycle factors
Common to processing body (P body) and stress granule
105601715 (UPF1)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
AAA_12
AAA_11
UPF1_1B_dom
AAA_30
AAA_19
ResIII
SLFN-g3_helicase
ATPase
nSTAND3
DEAD
Helicase_RecD
UvrD-helicase
AAA_16
SRP54
UvrD_C_2
AAA_22
AAA_25
Motif
Other DBs
NCBI-GeneID:
105601715
NCBI-ProteinID:
XP_011949870
LinkDB
All DBs
Position
Unknown
AA seq
765 aa
AA seq
DB search
MRLMQGDEICLRYKGDLAPLWKGIGHVIKVPDNYGDEIAIELRSSVGAPVEVTHNFQVDF
VWKSTSFDRMQSALKTFAVDETSVSGYIYHKLLGHEVEDVIIKCQLPKRFTAQGLPDLNH
SQVYAVKTVLQRPLSLIQGPPGTGKTVTSATIVYHLARQGNGPVLVCAPSNIAVDQLTEK
IHQTGLKVVRLCAKSREAIDSPVSFLALHNQIRNMDSMPELQKLQQLKDETGELSSADEK
RYRALKRTAERELLMNADVICCTCVGAGDPRLAKMQFRSILIDESTQATEPECMVPVVLG
AKQLILVGDHCQLGPVVMCKKAAKAGLSQSLFERLVVLGIRPIRLQVQYRMHPALSAFPS
NIFYEGSLQNGVTAADRVKKGFDFQWPQPDKPMFFYVTQGQEEIASSGTSYLNRTEAANV
EKITTKLLKAGAKPDQIGIITPYEGQRSYLVQYMQFSGSLHTKLYQEVEIASVDAFQGRE
KDFIILSCVRANEHQGIGFLNDPRRLNVALTRARYGVIIVGNPKALSKQPLWNHLLNYYK
EQKVLVEGPLNNLRESLMQFSKPRKLVNTINPGARFMTTAMYDAREAIIPGSVYDRSSQG
RPSSMYFQTHDQIGMISAGPSHVAAMNIPIPFNLVMPPMPPPGYFGQANGPAAGRGTPKG
KTGRGGRQKNRFGLPGPSQTNLPNSQASQDVASQPFSQGALTQGYISMSQPSQMSQPGLS
QPELSQDSYLGDEFKSQIDVALSQDSTYQGERAYQHGGVTGLSQY
NT seq
2298 nt
NT seq
+upstream
nt +downstream
nt
atgcggctcatgcagggggatgagatatgcctgcggtacaaaggggaccttgcgcccctg
tggaaagggatcggccacgtcatcaaggtccctgataattatggcgatgagattgccatt
gagctgcggagcagcgtgggtgcacccgtggaggtgactcacaacttccaggtggatttt
gtgtggaagtcgacctcctttgacaggatgcagagtgcattgaaaacgtttgccgtggac
gagacctcagtgtccggctacatctaccacaagctgctgggccatgaggtggaggacgta
atcatcaagtgccagctgcccaagcgcttcacggcgcagggcctccccgacctcaaccac
tcccaggtttatgccgtgaagactgtgctgcaaagaccgctgagcctgatccagggcccg
ccaggcacggggaagacagtgacgtcggccaccatcgtctaccacctggcccggcaaggc
aacgggccggtgctggtgtgtgctccgagcaacatcgccgtggaccagctaacagagaag
atccaccagacggggctaaaggtcgtgcgcctctgtgccaagagccgcgaggccatcgac
tccccagtgtctttcctggcccttcacaaccagatcagaaacatggacagcatgcctgag
ctgcagaagctgcagcagctgaaagatgagactggcgagctgtcgtctgccgacgagaag
cggtaccgggccttgaagcgtaccgcggagagagagctgctgatgaatgcagatgtcatc
tgctgcacatgtgtgggcgccggcgacccaagactggccaagatgcagttccgctccatt
ttaatcgacgaaagcacccaggccactgagccagagtgcatggttcccgtggtccttggg
gccaagcagctgatccttgtaggtgaccactgccaactgggcccggtggtgatgtgcaag
aaggcggccaaagccgggctgtcgcagtcgctcttcgagcgcctggtggtgctgggcatc
cggcccatccgcctgcaggtccagtaccggatgcaccctgcactcagcgccttcccgtcc
aacatcttctacgagggctccctccagaatggtgtcactgcagcggatcgtgtgaagaag
ggatttgacttccagtggccccagcccgataaaccgatgttcttctacgtgacccagggc
caagaggagatagccagctcgggcacctcctacctgaacaggaccgaggctgcgaacgtg
gagaagatcaccacgaagttgctgaaggcgggcgccaagccggaccagattggcatcatc
acgccctacgagggccagcgctcctacctggtgcagtacatgcagttcagcggctccctg
cacaccaagctctaccaggaggtggagatcgccagtgtggacgcctttcagggacgcgag
aaggacttcatcatcctgtcctgtgtgcgggccaacgagcaccaaggcattgggttttta
aatgaccccaggcgtctgaacgtggccctgaccagagcaaggtacggcgtcatcatcgtg
ggcaacccgaaggcgctgtcgaagcaaccactctggaaccacctgctgaactactacaag
gagcagaaggtgctggtggaggggccgctcaacaacctgcgcgagagcctcatgcagttc
agcaagccgcgcaagctggtcaacaccatcaacccgggagcccgcttcatgaccacagcc
atgtatgatgcccgggaggccatcatcccaggctccgtctatgatcggagcagccagggc
cggccctccagcatgtacttccagacccatgaccagattggcatgatcagtgccggcccc
agccacgtggctgccatgaacattcccatccccttcaacctggtcatgccgcccatgcca
ccgcctggctattttggacaagccaatgggcccgctgcaggccgaggcaccccgaaaggc
aagactggccgtgggggacgccagaagaaccgctttgggcttcctgggcccagccagacc
aacctccccaacagccaagccagccaggatgtggcgtcacagcccttctctcagggcgcc
ctgacgcagggctacatctccatgagccagccctcccagatgagccagcccggcctctcc
cagccggagctgtcccaggacagttaccttggtgatgagtttaaatcacaaatcgacgtg
gcgctctcgcaggactccacgtaccagggagagagggcgtaccagcatggcggggtgacg
gggctgtcccagtactaa
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integrated database retrieval system
