Carassius auratus (goldfish): 113049408
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Entry
113049408 CDS
T07313
Name
(RefSeq) general transcription factor IIH subunit 2-like
KO
K03142
transcription initiation factor TFIIH subunit 2
Organism
caua
Carassius auratus (goldfish)
Pathway
caua03022
Basal transcription factors
caua03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
caua00001
]
09120 Genetic Information Processing
09121 Transcription
03022 Basal transcription factors
113049408
09124 Replication and repair
03420 Nucleotide excision repair
113049408
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
caua03021
]
113049408
03400 DNA repair and recombination proteins [BR:
caua03400
]
113049408
Transcription machinery [BR:
caua03021
]
Eukaryotic type
RNA polymerase II system
Basal transcription factors
TFIIH
113049408
DNA repair and recombination proteins [BR:
caua03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TFIIH complex
113049408
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Ssl1
VWA_2
C1_4
VWA
Matrix
HscB_4_cys
Motif
Other DBs
NCBI-GeneID:
113049408
NCBI-ProteinID:
XP_026067511
Ensembl:
ENSCARG00000008707
UniProt:
A0A6P6K6B1
LinkDB
All DBs
Position
30:16236483..16240317
Genome browser
AA seq
392 aa
AA seq
DB search
MDEEPERAKRWEGGYERTWEVLKEDESGSLKATVEDILFQAKRKRVFESHGQVRLGMMRH
LFVIIDSSRSMEDQDLKPNRLTSTLKLMEYFVEEYFDQNPISQIGIITTKNKRAEKLTDL
AGNPKKHIAALKKSVDSTCVGEPSLYNSLNLAMQTLKHMPAHTSKEILVVFSSLTTCDPA
NIYELIKTLNGLKIRVSVIGLSAEVRVCTILTRETGGSYNVILDESHFKELLMLHVKPPP
ASSSSECSLIRMGFPQHAIASMSDQDAKPSFSMSHLDSAGEPGLTLGGYYCPQCRAKYTE
LPVECKVCGLTLVSAPHLARSFHHLFPLEAFQETPLEEYEGERFCEACQGELKDKSVFIC
LACKKVFCVECDLFIHDTLHCCPGCMQTDRTS
NT seq
1179 nt
NT seq
+upstream
nt +downstream
nt
atggacgaagaaccagagagagcaaaacgctgggaaggaggatacgaacgaacatgggag
gtgctgaaggaggatgaatctggatctctcaaagctactgtggaagacattcttttccag
gcaaagaggaaaagggtgtttgagagtcatggacaagttcggcttgggatgatgcggcac
ctctttgtgatcattgactcatcgagatcaatggaagatcaagacctgaagcccaacagg
ctcacctcaaccttaaagctgatggagtattttgtagaggaatactttgaccagaatcca
atcagtcagatagggatcattaccaccaagaacaagagggcggagaagctcactgatctt
gcagggaaccctaagaagcatatagcagctctgaagaaatccgtggactccacctgtgtt
ggcgaaccgtctctctacaactctctgaacttggctatgcagacactgaaacacatgcct
gctcatacaagcaaagagatcctggtggttttcagcagtcttaccacctgtgacccagcc
aacatctatgagcttatcaaaactctgaatggtttgaagatcagagtgtctgtgatcggc
ctgtcagcagaggttcgggtgtgcactattctcacaagagaaactggagggtcctacaac
gtgattctggatgagagtcattttaaagagctgctgatgctgcatgtgaagccacctcca
gccagctcctcctcagagtgctccctcattcgcatgggtttcccccagcatgccatagcc
tccatgtctgatcaggatgccaaaccctccttcagcatgtcgcacctggacagcgctggt
gaaccaggactcactcttggcggctactactgcccacagtgcagagccaaatacactgag
ctgccagtggagtgtaaagtgtgtggtctgactctggtttccgcacctcacttggcccgt
tccttccatcacctcttccccctcgaggccttccaggagaccccactggaggagtatgag
ggcgagaggttctgtgaagcttgccaaggagagttgaaagacaaaagtgtgtttatttgt
ctagcatgtaaaaaagtgttctgcgtggagtgtgatctcttcatacatgacacactgcac
tgctgtcctggctgcatgcagactgacaggacgtcctga
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