Carassius auratus (goldfish): 113064442
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Entry
113064442 CDS
T07313
Name
(RefSeq) LOW QUALITY PROTEIN: probable helicase senataxin
KO
K10706
senataxin [EC:5.6.2.-]
Organism
caua
Carassius auratus (goldfish)
Brite
KEGG Orthology (KO) [BR:
caua00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
caua03021
]
113064442
Transcription machinery [BR:
caua03021
]
Eukaryotic type
RNA polymerase II system
Other transcription-related factors
Transcription termination factor
113064442
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
AAA_11
AAA_12
SEN1_N
AAA_19
AAA_30
Viral_helicase1
UvrD-helicase
AAA_22
AAA_16
ResIII
nSTAND3
Helicase_RecD
Motif
Other DBs
NCBI-GeneID:
113064442
NCBI-ProteinID:
XP_026091079
Ensembl:
ENSCARG00000041242
UniProt:
A0A6P6M389
LinkDB
All DBs
Position
46:complement(17995877..18013775)
Genome browser
AA seq
2341 aa
AA seq
DB search
MEKCLWCTTSLEVEGDVAIVTMLRRYSSGQLSEREMDSLNEDLSCCLECVVEYHRARDKV
PDLHKRLWEMEKARLMHLLGTVLDKELEEDDIFIIEDDHEEPVSKISPAELHDRLRFPLF
EVLKYPYLLCHRDLCDLVVKALCKLQDMKQSLTVFEKYQGTYLLLVHPNEQVRRWAIDTA
KTMKSVDRDAYYDLQEIFFCMFYVIELGISLDFPDLEPESYAGGTVQMLPSHLYDSQNKK
NYWLGICMLLTQLSADAMDSLFMGQFNIPLCILNTMEGLKNENNPASDPFWPALHCFMVI
LDRLGSKIWGQVDPNMAFQTITGAASYVAEIRNIQKKTMRGMVKVEPEYDDNMVTCSQMV
YDCYASEKPNQASGSLSNSGISSNYMIYEDMQSLVTVLDSEMGQSMRVYGSTFLWFIPFV
RSIMELPELNASYISEVIHYLCDKIRENRHMLTGQTSVCDKVTEFFTRILIQIVELHSAE
GRMGILSRCAQKWVQEIVLCIILSDEPHAPPDRMGGFHGVSSTSYNLGMVGRQPASGGGI
GAIIPGCMKLIRLLLKEGIRRSVPGSTLFFNRLMQLRGVANKRWNLTRSESDELQKCLLR
VVRLMPERPDSPLSVVPSSCAPSVEAATNTVISRNSVPTLHQQQHEDQEAGPSRAGDAAA
FIKEEPLWNYGNNISEDLCSGLEKIAKVKKEPPDPVSVSKLRTPVQLERIKPDLGKVQEI
RSRLNDNQNLSKIKAIAKQKPDESLKPFPLTSVKVEGGFGAAEEEDDDDEPLDVRRTSLI
KSVNHKVESSDSEIDSSAVGKTPNRSMGSSKPHVESSTIVISDSDSDNDEGPNDVLRSPE
DHVLPESPGRDYDDLSESQVFEFETQQYVPSSWDTSDFDASVLSKPKSDQLLKPQVDKAP
CEASPSSETELNPDEDIERTCQQAEDKIIEQQQQPQEPADSSASSLSKASSTAESWDKFG
KPKPLDQIKEPQQPQEPADSCAPSLSKASSTAESWDKFGKPKPLLVKSAKTTPSDKKKPL
IIDALALKIRGHPWKRNSTSQDEEEPSSSTTPSCGTSSSPSSSCVSSPYFPAPSSRGTPA
IVPPKKVRKVVEPESTAERLGLKKKERKAFELSQRSLDCVAKLRCHGQKVQVEPQQKIRR
VRRVTKTTSQKRIVKGNKKLMGSQDIQFFKQIREKHQRPTTLASKPAKINQPAEVHLPEH
TVASSEAGDFFPYPQLDPDNENAESEIRSKGDGVGSDKRIESKYFQASETADVNQEEKPS
LTSEDDMDEEWMVLTQTGPTDMELCSQMEPLEEDELFLTQRDPVDMDIDPDSEPDTPEQP
VLTPKTYTTPIGGNDDHLFLKPSMSPMSQKKAKPSTTKIYTPSSRSASLVHEMEKVAKPL
VANVAKAKIPRLPPAMPPPKTFQPLQPPQLPKPLPSQQSPYAPLLVPSTKISSTXDPPSY
KVYQRPEAPVNKPVPATDQSPKFDLLFLTQAILKWDYRMLDNYKAFGSPNDLCQLPLKKV
PVMFPSYMEYFNTLYPLLQINAFEEIASEWLKEGRVKCHLSVQGIEYSNRTASANFTASI
SQEIDTKQLYPKESDLVILWLPDNTGAYAHNEPHFHEPHPHFGYVSRSSVSNRGPGSKLT
LNLTIQTRGNVSSVNSQPVLCEVIGSLISTFREFNALCSLRNGPMLRPLLNPHASYFTHT
LDSPSDLDSPEFNRDQARAIACGLAMIKRTHKTPRFLLIHGPPGTGKSKTIGGLLYKLLS
SGINSAAPVGNLHSKSRRTRVLLCAPSNAAIDSLMKKVILIFKDKCRNINAPQGNCGDIN
LVRLGNERTMSKALKPFSLDYQTKARAQRAQQTVEADINRRKEQLDQNIDNLSKRCAKTK
KDSSEFKTLMEQKLQFLKEREGLSRRIKECWIKRQESQAFVLQNAHVICCTLSTSGSTVL
ESTFRRLGNEMFSCVIIDEASQAKETETLIPMMYRSPSVILVGDPNQLPPTVVSQKAKEF
GYDQSLMARLCRSLCQSNPQPSPILLLSVQYRMHPEICEFPSKYIYNSALKDDCETAQKR
CSPSWPFKPYKVFDVTDGMEKKERGSFSNSKEVKLVLLLLKLLVKKQSDRVGVITPYNAQ
KQCILEAIRSSGLDKQLQVDVDTVDGFQGKEKDCIIVSCVRASSETGSIGFVGNRQRMNV
TITRAKLSLFILGHLRTLREQSDWGALIEDARRRKSIIKTMQNDYESDVRQILKSEREPP
TRSLSFPPISSTVTTPVIHAPVETGPAPMPVPQRDMSNMPRLIPLECPNNPRINERPRDP
RFAEPRPIREQIPDRDGRGFPGSRRSTNRANSCEADSRRTGHCSRYSSKHSGSSPSKRHR
R
NT seq
7026 nt
NT seq
+upstream
nt +downstream
nt
atggagaagtgtctgtggtgcaccacgtccctggaggtggagggagacgtggcgatcgtc
accatgttgcgtcgctacagctccggacagctgtctgagcgagagatggactctctgaat
gaagacctcagctgctgtctggagtgtgtggtggagtatcatcgagccagagacaaggtc
cctgatctgcacaagcgtttgtgggaaatggagaaggctcgactcatgcatttgttggga
accgttctagacaaggagctggaggaggatgatatctttattatcgaagatgaccacgag
gagccggtgtcgaagatctctcctgcagaattgcacgaccgcctccgtttcccgctgttt
gaagttctgaagtacccgtacctgctttgccaccgtgatctgtgtgatttggtggtaaaa
gccttgtgtaagctgcaggatatgaagcagtctttgactgtgtttgagaagtatcaagga
acatatctgcttctcgttcatcccaacgaacaggtgcgccgttgggcaatcgatacagca
aagaccatgaagagtgtggatcgggatgcctactatgaccttcaggagattttcttttgc
atgttttatgtcattgagcttggaatatctttggactttccagatttggagccagagtct
tatgcagggggcactgtacaaatgctgccctctcacctctatgattcacaaaataagaag
aactactggctaggtatctgtatgttactaacacagctcagcgctgatgcaatggactcc
ctgttcatgggacagtttaacatcccactttgcatactcaacacaatggaggggttgaaa
aatgagaacaatccagcttctgacccattctggccagcccttcactgttttatggtaatt
ctggaccgacttggttctaagatctggggtcaggttgaccctaatatggctttccagaca
atcactggagcagccagctatgttgcggaaataaggaacatacagaaaaaaaccatgcgg
ggcatggttaaagtggagcctgaatatgatgacaatatggtgacttgcagtcagatggtg
tatgactgttatgcctccgaaaaaccaaaccaagcatctggttcgttgtccaacagtggt
atttccagcaactatatgatctatgaggatatgcagtctcttgtcaccgtgcttgattct
gaaatgggccagagcatgcgtgtatacggaagcacttttctatggttcattccatttgtc
cgttccataatggaacttccagagctcaacgcttcctatattagtgaagtcatccactat
ctttgtgataagatacgagaaaatcgacacatgctaaccggacagacaagcgtgtgcgat
aaagtgaccgagttcttcactcgtattcttattcaaattgttgagctacattctgctgaa
gggcgaatgggaatactttctcgctgtgcccaaaagtgggtgcaagagattgtcttatgc
attatcctatcggatgaaccacatgcaccaccagacaggatgggtgggtttcacggagtc
agttcaacctcatacaaccttgggatggtcggaagacagcctgcatctggaggtggcatt
ggtgccataattcctggctgcatgaaactgattcgactactgctgaaagaagggataagg
agatctgtcccaggctcaaccctcttttttaatcggcttatgcaattgcgtggagttgca
aacaaacgatggaatctaacgcgttctgaatctgatgagcttcaaaagtgtttgttgaga
gttgtccggttaatgccagaaagacctgattctccactctctgttgttccatcctcatgt
gcaccatcagtggaggcagctacaaacactgttatttccagaaattcagtaccaaccctg
catcagcaacaacatgaggaccaggaggcaggaccaagcagagcaggagatgcagctgct
tttatcaaagaggagccactttggaattatggaaataatatctctgaggatctatgcagc
ggtcttgaaaaaattgcaaaggttaagaaagaaccccctgacccagtgtcagtttcaaag
ctgagaacacctgttcagttggaacgtattaaaccagatctgggtaaagtgcaggaaatt
agatccagattaaacgacaaccaaaatttgtcaaagatcaaagccattgccaaacaaaaa
cctgatgagtccttaaaaccttttcccttgacatcagttaaagtggaaggtggttttgga
gctgctgaggaggaggatgatgacgatgaaccccttgatgtcagacgaaccagtttgata
aaatctgtcaaccacaaagttgaatctagcgattccgaaattgacagtagtgctgttgga
aaaactcctaacaggtccatgggcagctcaaagccacatgtggagtccagtaccattgtc
atctctgattctgattctgataatgatgaagggccaaatgatgtcctaaggtctccagaa
gatcatgtcttgcctgagagcccgggtcgtgattatgatgatctcagtgaatcacaggtc
tttgagtttgagacgcagcaatatgtgccatcttcttgggatacttcagattttgatgca
tcagtcttgtcgaaaccaaaatcagaccaactactcaaaccacaggtggataaagctccc
tgtgaagcgtctccaagttcagagactgaactaaatccagatgaggacattgagaggacc
tgtcagcaagcagaagataagatcatagaacagcagcagcagccgcaagagccggcggat
tcaagtgcatcgtcactgtccaaagcatccagtactgcagagagctgggataaatttggc
aaaccaaaacctctggatcagatcaaagaaccgcagcagccacaagagccagcggattcc
tgtgcaccgtcactgtccaaagcatccagtactgcagaaagctgggataaatttggcaaa
ccaaaacctttgctggttaaaagtgcaaaaacaactccatctgataagaaaaagccactg
ataattgatgcccttgctcttaaaatcaggggccacccttggaaacgcaactccacatct
caggacgaagaggaaccttcctcttcaaccaccccgtcatgtggtacatcttcctctcca
tcatccagctgtgtttcttcaccttattttcctgcccccagttcacgtggcacccctgcc
attgttcctccaaagaaagtgcgcaaagttgttgagccagaatcaacagcagagcgtttg
ggattaaaaaagaaggaaaggaaagcctttgaactttctcagcgttcgctggattgtgtt
gctaaactgaggtgccatggtcagaaagtgcaggtagaaccacaacagaaaataaggcga
gtgcgtcgagtcactaagacaacttcacagaaacgtattgtaaaaggcaacaagaaactt
atgggttcacaagatattcagtttttcaagcaaattcgtgagaagcatcagaggccaaca
acattagcttccaaaccagcaaagatcaatcagccagctgaagtgcacttgccagaacat
acagttgcaagcagtgaagctggtgatttctttccctatcctcagctggatcctgataac
gaaaatgcagaatccgaaatccgttctaaaggtgatggggttggaagtgataagagaata
gaatccaagtacttccaagccagtgagactgctgatgtaaaccaggaagaaaaaccttct
ctgacatcggaggatgatatggatgaagaatggatggtcctcactcagacgggacccact
gatatggaactgtgctcccaaatggagccattggaggaagatgaactctttcttacccag
agagatccagttgacatggacattgatccagatagtgaaccggataccccagagcaacca
gtgttgacacctaaaacctatacaactcctattggtggaaatgatgatcatttgttcttg
aagcctagcatgtcaccgatgtctcagaaaaaggccaaaccttctaccacaaaaatatac
acccccagctcccgcagtgcctcacttgtccatgaaatggaaaaagtagctaagcctctt
gttgctaatgttgcaaaagcgaagattccccgactgcccccagcaatgccacctccaaaa
acatttcaacctctccagcctccacaactcccaaagccacttccttcacaacaatctcct
tatgctcctttgttggtcccgagtactaaaataagctctaccncagatccaccatcttac
aaggtataccaaagacctgaggctccagttaacaaaccagttcctgcaacggatcagagc
ccgaagtttgaccttttgttcttgacccaagcaatccttaaatgggattataggatgctt
gacaactacaaagcatttgggagtccaaatgatctatgccaactaccgctgaagaaggtg
ccagttatgtttcccagctacatggagtacttcaacaccttgtatcccctgctacaaatt
aatgcatttgaagagattgctagtgaatggctcaaagagggccgagtcaagtgtcaccta
agtgtccagggtatagaatacagcaatcgcacagctagtgccaacttcacggcaagcatt
tctcaggaaatcgatacgaaacaactatacccaaaagaaagtgaccttgtgatactttgg
ttgccggacaacactggagcatatgcccataatgaacctcatttccatgaaccacatcct
catttcggttatgtgtcccggtccagtgtttctaacagaggtccaggttccaagttaacc
ctaaacttgacgattcaaactcgtggtaatgtatcttcggtgaattcccaacctgtactc
tgtgaagttattgggtcattgatcagcactttccgggagttcaatgcactgtgttcgcta
cgaaatggaccaatgttgcgacctcttcttaatccacatgcatcttatttcacacacact
ctggacagcccatcggacctggattcaccagagttcaacagggaccaggcgagagcaata
gcttgtggtcttgccatgataaagagaacgcataagaccccaagatttctccttattcat
ggtcctccaggaaccgggaagagtaaaaccattggtggcctgttgtacaaacttctgtct
tcgggtattaacagtgctgctcctgtggggaaccttcactcaaagtctcgaaggacccgt
gttcttctctgtgcaccctcaaacgctgccatcgacagtctgatgaagaaagtcattttg
atctttaaagataaatgccgaaacatcaatgctcctcaaggtaactgcggtgacataaac
ctggtacgattgggaaatgaaaggaccatgtccaaggcactaaaacctttcagcctcgac
taccagactaaagctagagcacagcgagcccagcaaactgtagaagctgacataaacagg
cggaaagagcaactagaccaaaacattgacaatctctccaagcgatgtgcaaagacgaag
aaggattcttctgaattcaagacgttgatggagcagaagttgcagtttctgaaggagaga
gaaggactgagtcggcggattaaagagtgttggattaagcgacaggaaagtcaagctttt
gtgttgcaaaatgctcatgtgatctgctgcacgctcagcaccagtggaagtactgtcctc
gagagcactttccgtcgtctcggaaatgaaatgtttagctgtgtcatcatcgatgaggct
agtcaggctaaagaaactgagactctgattccaatgatgtaccgaagtccttctgtaatc
cttgttggtgatcccaaccagcttccaccaacggttgtctcccagaaagctaaggaattt
ggctacgaccaatctcttatggcaaggttatgcagaagtctttgtcagtcaaacccgcaa
ccctctcccatcctcctgctcagcgtacagtaccgcatgcacccagaaatctgtgaattc
ccctcaaagtacatctacaacagcgctctcaaggatgactgtgagacggctcagaagcgc
tgttcccccagctggcccttcaagccctacaaagtgttcgacgttactgatgggatggaa
aagaaggagagaggttccttttcaaacagtaaagaggtcaagttggtcttgctgctgttg
aagctgctggtcaagaagcagtccgatcgagtgggtgtcatcacaccctacaacgcccag
aagcaatgcatactggaagccatcaggagttcaggcctcgacaaacaacttcaggttgat
gtggatactgtagatggctttcagggcaaagaaaaggactgcataattgtgtcttgcgtg
agagccagcagtgaaactggttccattgggtttgtgggaaatcgtcagagaatgaacgta
accattacaagagccaaattaagtctcttcatactgggacatctacgcacactcagggaa
caaagtgattggggagctttgattgaggatgctaggaggcgtaaatctataatcaaaacc
atgcaaaacgattatgaaagtgacgtaaggcagattcttaaatccgaacgagagccgccg
actcgcagtctctcttttcccccaatcagcagcactgtgaccacacctgttatacatgca
cctgtggaaacaggccccgcccctatgcccgtcccccagcgcgacatgagcaacatgccg
cggctaatacctctagaatgcccaaataacccacggatcaatgaaaggcccagagaccca
cggtttgcagagccacggccaatcagagaacagataccagacagagatgggcggggcttc
cccgggtcacgccgctcaacaaacagagctaattcatgtgaagctgactctagacgtact
ggccattgttccagatattcttcaaaacacagcggttcttcaccttcaaaacgacacagg
agataa
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integrated database retrieval system
