Carassius auratus (goldfish): 113111921
Help
Entry
113111921 CDS
T07313
Name
(RefSeq) regulator of nonsense transcripts 1 isoform X1
KO
K14326
regulator of nonsense transcripts 1 [EC:
5.6.2.5
5.6.2.3
]
Organism
caua
Carassius auratus (goldfish)
Pathway
caua03013
Nucleocytoplasmic transport
caua03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
caua00001
]
09120 Genetic Information Processing
09122 Translation
03013 Nucleocytoplasmic transport
113111921
03015 mRNA surveillance pathway
113111921
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
caua03019
]
113111921
Enzymes [BR:
caua01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.3 DNA 5'-3' helicase
113111921
5.6.2.5 RNA 5'-3' helicase
113111921
Messenger RNA biogenesis [BR:
caua03019
]
Eukaryotic type
mRNA surveillance and transport factors
Surveillance factors
Surveillance complex
113111921
mRNA cycle factors
Common to processing body (P body) and stress granule
113111921
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UPF1_Zn_bind
AAA_12
AAA_11
UPF1_1B_dom
AAA_30
AAA_19
ResIII
SLFN-g3_helicase
ATPase
nSTAND3
DEAD
Helicase_RecD
AAA_16
UvrD-helicase
SRP54
UvrD_C_2
AAA_22
Motif
Other DBs
NCBI-GeneID:
113111921
NCBI-ProteinID:
XP_026132926
Ensembl:
ENSCARG00000001254
UniProt:
A0A6P6QE35
LinkDB
All DBs
Position
2:1597638..1617293
Genome browser
AA seq
1100 aa
AA seq
DB search
MSVEAYGPSSQTLTFLDTEEAELLGADTQGSEFEFTDFTLPSQTQTQGQTQSQLDNQVNG
PDGILPNGEDAVVKTSQLLAELNFEEDEEDTYYTKDLPVHACSYCGIHDPACVVYCNTSK
KWFCNGRGNTSGSHIVNHLVRAKCKEVTLHKDGPLGETVLECYNCGCRNVFLLGFIPAKA
DSVVVLLCRQPCASQSSLKDINWDSSQWQPLIQDRCFLSWLVKIPSEQEQLRARQITAQQ
INKLEELWKENPTATLEDLEKPGVDEEPQHVLLRYEDAYQYQNIFGPLVKLEADYDKKLK
ESQTQDNITVRWDLGLNKKRIAYFTLPKTDSGDMRLMQGDEICLRYKGDLAPLWKGIGHV
IKVPDNYGDEIAIELRSSAGAPVEVPHNFQVDFVWKSTSFDRMQSALKTFAVDETSVSGY
IYHKLLGHEVEDVIIKCQLPKRFTAQGLPDLNHSQVYAVKTVLQRPLSLIQGPPGTGKTV
TSATIVYHLARQGNGPVLVCAPSNIAVDQLTEKIHQTGLKVVRLCAKSREAIDSPVSFLA
LHNQIRNMDSMPELQKLQQLKDETGELSSSDEKRYRALKRTAERELLMNADVICCTCVGA
GDPRLAKMQFRSILIDESTQATEPECMVPVVLGAKQLILVGDHCQLGPVVMCKKAAKAGL
SQSLFERLVVLGIRPIRLQVQYRMHPALSAFPSNIFYEGSLQNGVTAADRIKKGFDFQWP
QPDKPMFFYVTQGQEEIASSGTSYLNRTEASNVEKITTRLLKAGAKPDQIGIITPYEGQR
SYLVQYMQFSGSLHTKLYQEVEIASVDAFQGREKDFIILSCVRANEHQGIGFLNDPRRLN
VALTRARYGVIIVGNPKALSKQPLWNHLLNYYKEQKVLVEGPLNNLRESLMQFSKPRKLV
NTINPGARFMSTAMYDAREAMIPGSVYDRSSTGRPSNMYFQTHDQVGMIGTGPNPMGSMN
IPIPFNLMMPPMPPPGYLGQVNGPAAGRGAPKGKTGGRGGRQRNRGTGNHGSGQANMPNS
QASQDLVSQPFSQGPLTQGYITMSQPSQMSQPGLSQPELSQDSYLGDEFKSQMDVALSQD
STYQGERAYQHGGVTGLSQY
NT seq
3303 nt
NT seq
+upstream
nt +downstream
nt
atgagtgtggaggcgtacgggccgagctcgcagacgctcaccttcctggacacggaggaa
gcggagctgctcggggccgacacgcagggctccgagttcgagtttaccgactttacgctg
cctagccagacccaaactcaaggccagacccagagccaactcgacaaccaggtgaacggg
cctgatggtattctgcccaacggagaggacgcagtggtaaagaccagccaacttctggcc
gagctgaactttgaggaggatgaggaagatacttactacactaaagacttgccggtgcac
gcctgcagctactgtggcatccatgatccagcatgtgtggtctattgcaacaccagcaag
aaatggttctgcaacggccgtggaaacacctctggcagtcatattgtgaaccacttggtg
agggccaaatgtaaggaggtgacgctgcataaggacgggccgctgggagagacggttctg
gagtgctataactgcggctgccgtaatgtcttcctgctcggcttcatcccggctaaagcc
gactctgtcgtggtgctcctctgcaggcagccgtgtgccagtcagagcagtctgaaggac
attaattgggacagctctcagtggcagcccctcatccaggaccgctgcttcctgtcctgg
ctggtgaagatcccgtccgagcaggagcagctgagggcacgtcagatcacggcacagcag
atcaataaactcgaggagctctggaaggaaaacccaacagcgactctggaagatttggag
aaacctggagtggatgaggaaccccagcacgttcttctacgctacgaagatgcctatcag
taccagaacatctttgggccactggtcaaactagaggctgactatgacaagaaactcaaa
gagtcccaaactcaagacaatataacagtgaggtgggatttgggactgaataaaaagcgg
atagcttatttcactctgcccaagacggattcaggtgacatgcgactgatgcaaggagac
gagatctgtctgcgctataaaggagacctggctccgctgtggaaagggatcggacacgtc
atcaaagtcccggacaattatggagatgaaatcgccatcgagctgcgcagcagtgctggt
gctcctgtggaggtgccacataacttccaggtggactttgtctggaagtcaacatctttt
gaccgaatgcagagcgccttgaagacgtttgcggtggacgagacctcggtgtccggctac
atctaccataaactgctgggtcacgaggtggaggacgttatcattaaatgccagctgccc
aaacgcttcactgcgcagggcttgccagacctcaaccactcgcaggtttatgctgtgaag
acggtgcttcagcgacccctgagtctgatccaggggcctccaggaaccggaaagactgtc
acttctgccaccatcgtctaccatctggccagacagggcaacggtccggttctggtttgt
gctccgagtaacatcgcagtggatcagctgacagagaagatccatcagacgggactgaag
gtggttcgtctgtgcgctaagagtcgtgaggccatcgattccccggtgtctttcctggct
ctgcacaatcagatccgcaacatggacagcatgccagagttgcagaaactgcagcagctg
aaggacgaaactggcgagctgtcgtcttctgatgagaaacgctaccgagctctcaaacga
accgctgagagagagctgctcatgaatgcagatgtgatctgctgcacatgtgtgggtgcg
ggtgaccctcgcctggctaagatgcagtttcgctccatcctcatcgatgagagcacacag
gccacggagcccgagtgcatggtgccagtggtgctcggggccaaacagctgattctggtg
ggtgaccactgtcagctgggtcctgtggtcatgtgtaagaaggcagctaaagcaggtctg
tctcagtctctgtttgagaggctggtggtcctgggcatcagacccatccgtctgcaggtg
cagtaccgcatgcacccggccctcagcgccttcccttcaaacatcttctacgagggctct
ctgcagaacggagtcaccgctgctgatcgcatcaagaaaggctttgactttcagtggcct
cagcccgataagcccatgtttttctacgtgacccagggccaagaggagatcgcgagctct
ggcacttcttatctcaacaggactgaggcgtctaatgtggagaagatcaccacccgtctg
ctgaaggccggagccaaacctgaccagatcggcatcattacaccctacgagggccagcgc
tcttacctggtgcagtacatgcagttcagcggctctctgcacaccaaactataccaggag
gtggagatcgccagcgtggatgcgttccagggcagagagaaggacttcatcatcctgtct
tgtgtcagagctaatgagcaccagggcatcggcttcctgaacgacccacggcgtctcaat
gtggcgctaaccagagccagatatggcgtgatcattgtgggcaaccctaaggctctgtcc
aagcagcctctgtggaaccacctgctcaactactacaaggagcagaaggttctggtggaa
ggaccgctcaacaacctgagagagagcctcatgcagttcagcaaaccacgcaagctggtc
aacaccatcaaccctggagcccgtttcatgagtactgccatgtatgacgcgagagaggcc
atgattcctggatctgtgtatgatcgcagcagcactgggcgtccttctaatatgtacttc
cagactcatgaccaggtcggtatgatcgggacggggccgaaccccatgggttccatgaac
atccccatcccgttcaatctgatgatgcctcccatgcctccgcctgggtacctgggtcag
gtgaacggacccgcagccggtcgtggtgctcctaaaggtaagaccgggggtcgtggaggt
cgtcagaggaaccgtggcaccggtaatcacggcagcggtcaggccaacatgccaaacagc
caggccagtcaggatctagtgtcccagcccttctctcagggtccactgacccagggctac
atcaccatgagccagccgtcacagatgagccagcctggactgtcccagcccgagctctct
caggatagctacctgggtgatgagttcaaatcccagatggacgtcgcgctttcccaggat
tccacctaccaaggagaacgggcatatcaacacggaggagtgactggactctcacagtac
tag
DBGET
integrated database retrieval system
