Corynebacterium auris: CAURIS_03890
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Entry
CAURIS_03890 CDS
T09271
Symbol
mfd
Name
(GenBank) Transcription-repair-coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
caui
Corynebacterium auris
Pathway
caui03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
caui00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
CAURIS_03890 (mfd)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
caui03400
]
CAURIS_03890 (mfd)
Enzymes [BR:
caui01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
CAURIS_03890 (mfd)
DNA repair and recombination proteins [BR:
caui03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
CAURIS_03890 (mfd)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
TRCF
UvrB_inter
Helicase_C
CarD_TRCF_RID
ResIII
AAA_22
CbiX
AAA_30
RecG_dom3_C
Motif
Other DBs
NCBI-ProteinID:
WJY67695
LinkDB
All DBs
Position
810815..814429
Genome browser
AA seq
1204 aa
AA seq
DB search
MTDTTPALGGLLTVAAGDPKLKGLAGSVGKERLHVTGIDQVRSWATATLARQTPVLLVTA
TGHEAEDLAAELAALLGEEQVAQLPALETLPHERLSPAADVVGRRAKVLWEMPRVIVAAA
RAACQPVLPAIEPIAVAREQEHDFGELTQRLVGYAYDHVDMVSKRGEFATRGGIIDVFPT
TADNPVRIEFWGDEITDIRTFSVADQRAIDEVEAVEFFPARQLLIDAPVAARAAELARQY
PSNPTLVQLLTRISEHTYADGMEALIPVLTDAPFAALPELLPQGAIVLVTSPEKVKARVA
DLEATDREFLEAGWEAAAMGAEGPVAVEGLDLSPSSYRSFDSLEVSARKAGVAWWTFAPP
GMFSAADEETLPLEFDPAPAPKGDPKAIEQLYATLKLHLSDNSGTAAFVAPAKGTVERTA
ERLRERGISARLATPGMEPVAGAVTLYQALSHAGLVFPGPNLVVVTETDVTGNRVGDIAG
AKRRAPRRRNRVDPLALKPGDFVVHDTHGIGKFVKMAERTVKAGDEDSRREYIVLEYQPA
KRGQPNDQLWVPMESLDLLSKYSGGEQPSLSKMGGSDWKNTKRKARAAVREIAGELVELY
AKRQAAPGHAFAPDTPWQHEMEDNFPFVETEDQLTAIEAVKSDMEKPVPMDRVIVGDVGF
GKTEVAVRAAFKAVQDGMQVAVLVPTTLLAQQHFSTFSQRMDGFGVTVRELSRFTTTKES
KEIFAGLADGSIDVVIGTHRLLQTGVHWKNLGLIVVDEEQRFGVEHKEHIKALKSHVDVL
TMTATPIPRTLEMSLTGIREMTSITTPPEDRHPVLTYVGPQEDKQIAAAIRRELLRDGQV
FYIHNKVTDIEKTARRLRELVPEARVVVAHGQMSEQVLEQTVQGFWNRDYDVLVCTTIVE
TGLDIANANTLIVENAQNMGLSQLHQLRGRVGRSRDRAYAYFLYPKDKTLTETSYDRLAT
IAQNNDLGAGMAVAQKDLEMRGAGNVLGAEQSGHIAGVGFDMYVRLVGEAVETFKALMSG
ETVDATDKGPKEIRVDLPVDAHIPESYINSERLRLDAYRKLAEARDDAGLAKVADEMVDR
FGPLPTEVERLMAVARLRHQARRAGVSDIVVQGSRLKFQPVELPDSKQVRLKRLYPGANY
RAAAKALQVPFPRSAKGVNQPTLRDVELLQWVSDFLSEMFDVEKISVTGSTPAEEKKKVF
SVSE
NT seq
3615 nt
NT seq
+upstream
nt +downstream
nt
atgaccgacaccacgcccgccctcggcgggttgctcaccgtcgcagccggcgacccgaag
ctgaaggggctggcgggcagcgttggaaaggagcgcctccacgtcaccggcatcgaccag
gtacgcagctgggccacggccacgctggcgaggcagacgcccgtcctcctggtcacggcg
accgggcacgaggcggaggacctcgccgccgagctcgcggccctgctgggcgaggagcag
gtggcgcagctgcccgccctggagacgctgccgcacgagcgcctctcgcccgcggcggac
gtcgtcggcaggcgcgcgaaggtgctgtgggagatgccgcgcgtcatcgtcgccgccgcc
cgcgccgcgtgccagccggtgctgcccgcgatagaaccgatcgcggtggctcgcgagcag
gaacacgactttggtgagctgacgcagcgcctggtcggctacgcctacgatcacgtcgac
atggtgtccaagcgcggggagttcgccacgcgcggtggcatcatcgacgtcttcccgacc
acagccgataacccggtgcgcatcgagttctggggtgacgaaatcaccgacatccgcacc
ttctcggtcgccgatcagcgcgccatagacgaggtcgaggccgtggagttcttccccgcc
cgccaattgcttatcgacgcccccgtggccgcccgtgccgccgaactcgcccggcaatac
ccgtcgaacccgaccttggtgcagctgctgacccgcatttccgagcacacctacgccgat
gggatggaggcgctcatcccggtgctcactgacgcccccttcgcggccctgcccgagttg
cttccgcaaggggcgatcgtgctcgtgacctcgccggagaaggtgaaggcgcgggtggcg
gacctggaggcgaccgaccgcgagttcctcgaggccggctgggaggccgccgccatgggc
gccgagggacccgtcgccgtggaggggctggacctctcgccaagctcgtaccgctccttt
gactccctggaggtcagcgcgcggaaagccggggtggcgtggtggaccttcgccccgccc
ggtatgttctccgccgcggacgaggagaccctgcctttggagttcgatccggcgccggca
ccgaagggggatccgaaggccatcgagcagctctacgccacgctgaagctgcacctgtcg
gacaacagcggtacggccgcgttcgtcgccccggcgaaaggcaccgtggagcgcacggcg
gagcgtctgcgcgaacgcgggatctcggcgcgcctagccacccccggcatggaaccggtc
gccggggcggtgaccctgtaccaggcgctttcacacgcgggtctggtctttcccggcccg
aacctggtggtggtcaccgaaaccgacgtgacgggcaaccgcgtcggcgacatcgcgggc
gcgaagcggcgcgccccgcggcggcgcaaccgagtggatcccctcgccctcaagccgggg
gacttcgtggtccacgacacgcacggcatcggcaaattcgtgaagatggcggagcgcacg
gtcaaggccggtgacgaggactcgcgccgcgagtacatcgttctggagtaccagccagcc
aagcgcggccagccgaacgatcagctctgggtgcccatggagtcgttggacctgctgagc
aagtattccggcggagagcagccgtcgctatcgaagatgggcgggtctgactggaaaaac
accaagcgcaaggcgcgcgcggcggtgcgcgaaatcgccggggagctcgtcgagctctac
gccaagcgtcaggccgcgccgggccacgccttcgccccggacaccccgtggcagcacgag
atggaggacaacttccccttcgtggaaacggaggaccagctcaccgcaattgaggcagtg
aagtccgacatggaaaagcccgtcccgatggaccgcgtcatcgtcggcgacgtcggcttc
ggcaagacggaagtggcagtgcgcgccgcgttcaaggctgtccaggacggtatgcaggtt
gcggtgctcgtgcccacgacccttctggcccagcagcacttttccacgttcagccagcgt
atggacggcttcggggtcaccgtgcgcgagctgtcgcgctttaccactacgaaggaatcg
aaggagattttcgcggggcttgccgacggctctattgacgtcgtcattggcacccaccgg
ctgctgcaaacgggcgtgcactggaagaacctcggtctcatcgtggtcgacgaggagcag
cgcttcggcgtcgagcacaaggaacacatcaaggcgctcaagtcgcatgtcgacgtgctc
acgatgacggcgacgccgatcccgcgcaccctcgagatgtctctgaccggcatccgcgag
atgacctcgatcacgaccccgccggaggaccgccacccggtgctgacgtacgtcggcccg
caggaggacaagcagatcgccgccgccatccggcgcgagttgcttcgcgacggccaggtc
ttctacatccacaacaaggtcaccgacatcgagaaaaccgcacgccgcctgcgcgagctc
gtcccggaggcccgcgtcgtcgtggcccacggccagatgtcggagcaggtcctcgagcag
acggtccagggcttctggaatagggactacgacgtgctggtgtgcaccaccatcgtcgaa
accggcctcgacatcgcgaacgcgaacaccctgatcgtggagaacgcgcagaacatgggg
ctttcccagctgcaccagctgcgcgggcgcgtgggccgctcccgggaccgcgcctacgcc
tacttcctttacccgaaggacaaaacgctcaccgagacctcctacgaccgcctggccacc
atcgcgcagaacaacgacctcggcgcgggcatggcggtggcgcagaaggacctcgagatg
cgcggcgcgggcaacgtgctcggcgccgagcagtcgggccacatcgcaggggtgggcttt
gacatgtacgtccgcctcgtcggagaggccgtggagacctttaaagccctcatgtcgggc
gagacagtggacgcgaccgacaaggggccgaaggagatccgtgtggacctgcccgtggac
gcgcatatccccgagtcctacatcaactccgagcgcctgcgcctcgacgcctaccgcaag
ctcgccgaggcccgcgacgacgccggcctggcaaaggtcgccgacgaaatggtcgaccgc
ttcggccctctgcccaccgaggtcgagcggctcatggcggtggcccggctgcgccatcag
gcgcggcgcgccggggtgtccgacatcgtggtgcagggctctcgcctgaagttccagccc
gtcgagctgccggactcgaagcaggtgcgcctgaagcgcctctatccgggcgcgaattac
cgcgccgcggccaaggccctccaggttccgttcccccgctccgccaagggagtcaaccag
cccacgcttcgtgacgtcgaacttctccaatgggtctccgattttctgtccgagatgttc
gacgtggagaaaatctccgtgacggggtcgacgccggcggaggagaaaaagaaggtgttt
tcggtgagcgagtag
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