KEGG   Corylus avellana (European hazelnut): 132163569
Entry
132163569         CDS       T09426                                 
Name
(RefSeq) DNA ligase 1
  KO
K10747  DNA ligase 1 [EC:6.5.1.1 6.5.1.6 6.5.1.7]
Organism
cave  Corylus avellana (European hazelnut)
Pathway
cave03030  DNA replication
cave03410  Base excision repair
cave03420  Nucleotide excision repair
cave03430  Mismatch repair
Brite
KEGG Orthology (KO) [BR:cave00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03030 DNA replication
    132163569
   03410 Base excision repair
    132163569
   03420 Nucleotide excision repair
    132163569
   03430 Mismatch repair
    132163569
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03032 DNA replication proteins [BR:cave03032]
    132163569
   03400 DNA repair and recombination proteins [BR:cave03400]
    132163569
Enzymes [BR:cave01000]
 6. Ligases
  6.5  Forming phosphoric-ester bonds
   6.5.1  Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
    6.5.1.1  DNA ligase (ATP)
     132163569
    6.5.1.6  DNA ligase (ATP or NAD+)
     132163569
    6.5.1.7  DNA ligase (ATP, ADP or GTP)
     132163569
DNA replication proteins [BR:cave03032]
 Eukaryotic type
  DNA Replication Elongation Factors
   Other elongation factors
    132163569
 Prokaryotic type
   Elongation factors (archaeal)
    Other elongation factors
     132163569
DNA repair and recombination proteins [BR:cave03400]
 Eukaryotic type
  SSBR (single strand breaks repair)
   BER (base exicision repair)
    Long Patch-BER factors
     132163569
   NER (nucleotide excision repair)
    Other NER factors
     132163569
   MMR (mismatch excision repair)
    Other MMR factors
     132163569
SSDB
Motif
Pfam: DNA_ligase_A_M DNA_ligase_A_N DNA_ligase_A_C RNA_ligase
Other DBs
NCBI-GeneID: 132163569
NCBI-ProteinID: XP_059429880
LinkDB
Position
ca10:complement(10601651..10615567)
AA seq 783 aa
MLSLRSCCCLRHHTSLSLPLVKALSFSRFPTKPFSLSPYLHPFSSANPSSVAMSSRPSAF
DALMSGARAAAKKKPQPQSSSPAKRKAPDSNNPPLNPSTPNSLPPQNPISCESSVVPEEA
IASKKKKIQDVCAEDRVAQLKSKMPQLKLKAGDFSPKSVACWGEGERIPFIFLCLVFDMI
SKETGRIVITDIVCNMLRTVMHTTPDDLVAVVYLSANRIAAAHEGLELGIGDASIIKALA
EACGRTDVQVKKQYKELGDLGLVAKASRSSQSMMRKPDALTVTKVFNTFRLIAKESGKDS
QEKKKNHIKGLLVAATDCEPLYLIRLIQTKLRIGLAEQTLLAALGQAAVYTEEHSTPPPN
IQSPLEEAAKIVKRVYSVLPVYDKIVPALLSGGVWNLPQSCSFTLGVPVGPMLAKPTKGV
SEIVNKFQDMEFTCEYKYDGERAQIHYMDNNSVEIYSRNAERNTEKFPDVVIAVSRLKKS
PVKSFVLDCELVAYDREKKKILPFQILSTRARKNVALGDIKVDVCIFAFDMLYLNGEPLL
QEELKVRRKHLYDSFDEESGFLQFATAITSNDLEEIQKFLDTSVDSSCEGLIIKTLTRDA
TYEPSKRSLNWLKLKKDYMDSIGDSLDLVPIAAFHGRGKRTGVYGAFLLACYDSNNEEFQ
SICKIGTGFSETMLEERSASLRSKVIPKPKPYFRYADSINPDVWFEPTEVWEVKAADLTI
SPVYRAAIGIVDRDKGISLRFPRLVRVREDKTPEQSSSSEMVAEMYNAQKHNHPNDQGDN
EDD
NT seq 2352 nt   +upstreamnt  +downstreamnt
atgctctcacttcgttcatgctgttgcctacgccatcatacctcgctctcgctccccctc
gtcaaggccctctctttctctcgcttccccaccaaacccttctctctctccccctatctc
caccccttctcttccgccaaccctagctccgtagccatgtcctcccgcccttccgctttc
gacgccctcatgtccggcgctcgggccgccgccaagaaaaagccccagccccagtcttcg
tctcccgccaaacgcaaagccccagattctaacaaccctcccctaaaccctagcaccccc
aattctttgccgccccaaaaccccatttcctgcgaatcgagcgtggtgcccgaggaggcg
attgcctcgaagaagaagaagatccaagatgtttgcgcggaggatagggttgcgcaattg
aagagcaaaatgccgcagttgaagctgaaggccggggatttcagtccgaaatcggttgct
tgttggggcgagggcgagcggattcccttcatttttctctgtttggtttttgatatgatt
tcgaaggagacgggccggattgtgattacagatatagtgtgtaatatgctcaggactgtg
atgcataccacgccggatgatctcgtggcggttgtttacctttcggcaaacaggatcgcg
gctgcgcacgagggcttggagctgggaattggggacgcttccataattaaggcgctcgcg
gaggcttgtgggaggaccgacgtgcaggttaaaaagcaatacaaggaattgggagacttg
ggtcttgttgcaaaagcaagccgttcatctcaatctatgatgcgcaagcctgatgcatta
actgttaccaaggtttttaatacattccggctcattgctaaggaatctgggaaggatagt
caagagaagaaaaaaaaccatatcaagggactgcttgttgctgccaccgactgtgaacca
ctatatctaattcgtctaattcagacaaagttgcgtattggattagcggagcagacccta
ttagctgcattgggtcaagctgctgtatatactgaagaacattctacaccacctccaaac
atccagtctcctctagaagaggctgcaaagattgttaaacgagtgtactctgtacttcct
gtctatgataaaatagttcctgcccttctcagtggtggtgtttggaatcttccacagtca
tgtagctttacactcggtgtcccagttggacctatgttagcaaagccaactaagggggta
tctgagattgtaaataaattccaggatatggaatttacctgtgaatacaagtatgatgga
gaacgtgcccagatacattacatggacaataattcagttgagatatacagtcgaaatgct
gaacgaaacactgaaaagttccctgatgttgtcattgcagtttcaaggttgaagaagtca
cctgttaaatcatttgtgctggattgtgaacttgttgcttatgaccgtgaaaaaaaaaaa
attctgccattccagatcctcagcactcgagctcgcaaaaatgttgctctgggtgatata
aaggttgatgtttgcatatttgcttttgatatgctgtatcttaatggtgaaccacttctt
caggaagaacttaaagttcgtaggaagcacctttacgactcttttgacgaagaaagtgga
tttctccagtttgcaactgcaataacatcaaatgatctcgaggaaatacagaaatttctt
gacacctctgtcgattcaagttgtgagggtttaattatcaaaacactgactagagatgct
acatacgagccttccaagcggtcactgaactggctaaaattgaagaaagattacatggat
agtattggggactcactagatctggtacctattgctgctttccacggccgtgggaagcgt
acaggtgtctatggtgcctttctccttgcttgttatgacagcaataatgaagaatttcaa
agcatttgtaaaataggcactggattttctgaaacaatgcttgaagaacgttctgccagt
ctccgttctaaagtgattcctaaaccaaagccctactttcggtatgcagattcaattaat
ccagatgtatggtttgaacccactgaggtttgggaggtgaaagctgcggacttgactatt
agccctgtttatcgtgctgcaattggcatagtggatcgtgataagggcatttctctccga
tttccacgtctggttcgtgtccgggaagataagactccagagcagtcgtcctcatccgag
atggtggctgagatgtataatgctcaaaagcacaatcatccgaacgatcaaggtgataat
gaagatgattga

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