Corylus avellana (European hazelnut): 132177368
Help
Entry
132177368 CDS
T09426
Name
(RefSeq) regulator of nonsense transcripts UPF3-like isoform X1
KO
K14328
regulator of nonsense transcripts 3
Organism
cave
Corylus avellana (European hazelnut)
Pathway
cave03013
Nucleocytoplasmic transport
cave03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
cave00001
]
09120 Genetic Information Processing
09122 Translation
03013 Nucleocytoplasmic transport
132177368
03015 mRNA surveillance pathway
132177368
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
cave03019
]
132177368
Messenger RNA biogenesis [BR:
cave03019
]
Eukaryotic type
mRNA surveillance and transport factors
Surveillance factors
Surveillance complex
132177368
mRNA cycle factors
P-body specific factors
132177368
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Smg4_UPF3
RRM_2
Ribosomal_L24e
Motif
Other DBs
NCBI-GeneID:
132177368
NCBI-ProteinID:
XP_059445632
LinkDB
All DBs
Position
ca4:1174214..1183423
Genome browser
AA seq
524 aa
AA seq
DB search
MKGSSSDRTKVVLRHLPPAISQATLMDQIDAAFAGRYHWVAFRPGKSSLKHQSYSRAYID
FKKPEDVIEFAEFFDGHLFVNEKGTQFKTIVEYAPSQRVPKQWSKKDSREGSILKDPEYL
EFLEYLAKPVENLPSAEIQLERREADRMGAAKDAPVVTPLMDFIRQKRAAKGGSRRSLSN
GKPGRRTAGSSTGSPSSTLSKRGSERRRSSSTMYVLRDGAKNVSVKDKSTYILVPKRDDE
QLSDKSVTLAPAAGTEVLEEENGVSGTNESGKKKILLLKGKEREISYVSGTLSQQQGITS
SVRNIIGSPTLKQNQQRQGSGKIVKRILLNKDSRQNQSFVAQSEHQIQTSNLEKDKRPPR
PPHGQLVFKDTNPTPDDKVVANDVHGFCSEKQEKRLRNKDKPDRGIWTSLRRSDGSHASD
ESLSSSASQPIQSLGDSSEGCHGDMKVDMANARSGEVKNLGTGRTSHSSLDNGSHKHFGR
RGPTHGVKDVDGSSIISEGKHSRRGAGYNSHEKQVWVQKSGSGS
NT seq
1575 nt
NT seq
+upstream
nt +downstream
nt
atgaagggctcgtcgtcggatcggacgaaggtggtgctacggcacttgccgccggcgatt
tcgcaggccacgctcatggaccagatcgacgccgccttcgccggtcgctaccactgggtc
gctttccgtcctgggaaatcaagcctgaagcatcaatcctattctagagcctatattgac
ttcaagaaacctgaggatgttattgagttcgctgagtttttcgatgggcatttgtttgtt
aatgagaagggcactcagtttaaaactattgttgagtatgctccttctcaacgcgttcca
aagcagtggtctaagaaagacagccgtgaaggaagcatattaaaagatcccgagtatctg
gagtttcttgaatatcttgcgaagcctgtcgaaaatcttcccagtgcagagatacaattg
gagagaagagaagctgatcgaatgggtgctgcaaaagatgctcccgtagttacaccatta
atggactttatacgtcagaaaagagctgctaagggtggttctcggcgatctttgtctaat
gggaaaccgggcagaagaactgctggatcatcaactggaagtcctagttccaccttgtcg
aaacgaggttctgagaggaggaggagttcctccacaatgtatgttttaagggacggtgca
aagaacgtgagtgtcaaagacaagtcaacatacattctggttccaaagcgagatgatgag
cagctttctgacaagtctgttactttggctcctgcagctgggacggaagtactggaagag
gaaaatggagtttctggaactaatgaatctgggaaaaagaaaatcctgctcctgaaaggg
aaagagagggagatttcttatgtgtctggcaccttgtcacagcagcagggtataacatca
tcggtcagaaatattattggttcacctactctcaagcagaaccagcagcgccaaggtagt
ggaaagatcgtcaaaagaatacttttaaacaaggattcacgtcaaaatcagtcttttgtg
gcccagtccgagcatcaaatccagacttcaaatttagaaaaggacaagcgacctcctcga
cccccacatggacaattggtttttaaggatacaaatccaactccagatgataaggtggtt
gctaatgacgtgcacggattctgtagtgagaagcaggagaaacgtttgagaaataaggat
aagcctgatcgtggtatatggacatctcttcgacggtcagatggatcccatgctagtgat
gagtctttgtcatcctctgcttctcaacctatacagtcacttggagattcttcggaaggg
tgtcatggggatatgaaagttgacatggcaaatgctaggagtggcgaagttaaaaacctt
ggaactggacgtactagtcattcttctttagataatggttcccataaacattttggtcgc
cgtgggccaacacatggtgtgaaggatgttgatggctcatcaattataagtgaggggaag
cattcgaggagaggcgctggctataattcccatgagaagcaagtttgggttcaaaagtct
ggttctggttcgtaa
DBGET
integrated database retrieval system
