Corylus avellana (European hazelnut): 132189107
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Entry
132189107 CDS
T09426
Name
(RefSeq) DEAD-box ATP-dependent RNA helicase 42
KO
K12811
ATP-dependent RNA helicase DDX46/PRP5 [EC:
5.6.2.7
]
Organism
cave
Corylus avellana (European hazelnut)
Pathway
cave03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
cave00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
132189107
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
cave03041
]
132189107
Enzymes [BR:
cave01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
132189107
Spliceosome [BR:
cave03041
]
Complex A
U2 snRNP components
U2 related factors
132189107
Complex B
132189107
BRITE hierarchy
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Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
FGGY_C
Motif
Other DBs
NCBI-GeneID:
132189107
NCBI-ProteinID:
XP_059459615
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All DBs
Position
ca8:25474778..25480532
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AA seq
1146 aa
AA seq
DB search
MDEGKHKSRREESEKSEEDVKRSHHRDREREREKERNGERHREKRSRDSRRSERERSSDS
DDKYEKEREKEKQRERERAREKKREREREEREREKEREKEKRERAREKDREREREREKRE
REREEREREREEREREKERERKEREKEREKEKEKERRRRREADSDGSDGGDEHRERDRKR
RRRDNDDYKERDRERSSSRPRKHRDDSEERKKSGDDDSDKIEKKQTREEELEDEQRRLDE
EMEKRRRRVQEWQELRRAKEEAERENHGEATADEPKSGKAWTLEGESDDEEVPHTGKSET
EMDVDEEAKPTNEKEGDQDSVFVDSENGTVASTLANVGNGAAGDDEEIDPLDAFMNSMVM
PEVEKLNNTLAPSTVEDKNVDSKNKDKKHEGSNSEQPRKGPKKSMGRIMQGEDSESDYGD
LEKDEDPLEDEDDDEFMKRVKKTKAEKLSIVDHSKIDYIPFRKNFYIEVKDIAKMTSEEV
VAYRKELELKLHGKDVPKPIKTWHQTGLTSKILETIKKHNFEKPMPIQAQALPIIMSGRD
CIGVAKTGSGKTLAFVLPMLRHIKDQPEVVAGDGPIGLIMAPTRELVQQIHSDIKKFAKV
LGIRCVPVYGGSGVAQQISELKRGTEIVVCTPGRMIDILCTSGGKITNLRRVTYLVMDEA
DRMFDMGFEPQITRIVQNIRPDRQTVLFSATFPRQVEVLARKVLNRPVEIQVGGRSVVNT
DITQLVEVRPESDRFFRLLELLGEWYEKGKILIFVHSQEKCDALFRDLLRHGYACLSLHG
AKDQTDRESTISDFKSNVCNLLIATSVAARGLDVKELELVINFDVPNHYEDYVHRVGRTG
RAGRKGCAITFISEEDARYAPDLVKALELSKQAVPDDLKAVADSFMTKVNQGLEQAHGTG
YGGSGFKFNEEEDEVRRAAKKAQAKEYGFEEDKSDSDDDNEGIRKAGGDISQQAALAQII
AAASKVSTPSMQTPVSASQLLPNGGLPVTLPGVIGLTIPGTAPVVPGSGLPAANEAAGAA
RAAAIAAAFNLQQNLAKIQADALPEHYEAELEINDFPQNARWKVTHKETLGPISEWTGAA
ITTRGQYFPPGRIAGPGERKLYLFIEGPTEQSVKKAKSELKRVLEDITNQALQLPGGAQP
GRYQVL
NT seq
3441 nt
NT seq
+upstream
nt +downstream
nt
atggatgagggaaaacataaatctaggcgagaggaatcggagaagagtgaggaggatgtg
aagcggagccaccaccgcgatcgcgagagagaaagagagaaggagaggaatggagagagg
cacagggagaagaggagcagagatagtcggcgatcggagagagagaggagcagtgattcc
gatgacaagtatgagaaggagagggagaaggagaagcagagagagagggaaagagccaga
gagaagaagagggaaagagagagggaagagagggagagggagaaagagagagagaaagag
aagagagagagggcgagggagaaggacagagagagggagagagagagagagaagagggaa
agggagagagaggagagggagagggagagagaggagagggaaagggagaaggaaagggag
aggaaggagcgagaaaaagaaagggagaaggaaaaagagaaggagaggaggaggcgaaga
gaagccgacagtgatggcagcgatggtggtgatgagcacagggagcgtgataggaagcgg
cgaaggagagacaatgatgattacaaggagagagatcgtgaacggagcagcagcaggcct
cgcaagcacagggatgacagtgaagagaggaaaaagagtggtgacgatgattcggataag
atagagaagaaacaaacacgggaagaggagttagaggatgagcagcggagattggatgag
gaaatggaaaagaggaggaggagagtgcaggagtggcaagagttgaggagagccaaggaa
gaagctgagagagagaatcatggggaagctactgctgatgaaccaaagtctggtaaggcc
tggactcttgaaggagagtctgacgacgaagaagtaccgcatacaggaaaatcagagaca
gaaatggatgtggatgaagaggccaagcctaccaatgaaaaagagggtgatcaggattca
gtgtttgttgattccgagaatggaacggttgcatccactttggcaaatgtgggcaatggt
gctgctggagatgatgaggaaattgatccattggacgctttcatgaattctatggtgatg
cctgaagttgagaagctaaacaatactttggcgccctcaactgttgaggataagaatgtg
gactcgaagaacaaagataagaagcatgaaggaagtaacagcgaacagccccggaagggt
ccaaaaaaatctatggggagaataatgcagggtgaagattcagagtcagattatggtgac
cttgagaaggatgaggatcctttagaagatgaagatgatgatgagttcatgaaaagggtg
aagaagacaaaagctgagaagctttctatagttgaccactcaaagattgattatataccg
ttcagaaaaaatttctacatcgaagtgaaagatattgcaaagatgacttctgaagaggtt
gttgcttacaggaaagaattggaattgaagctacatggtaaggatgtgccaaagccgatc
aaaacctggcaccaaactggacttacaagtaaaatcttggagacaataaagaaacataac
tttgaaaagccaatgccaattcaagcccaggctttgcctataattatgagtggtcgagac
tgcataggtgttgcgaaaactggctcgggcaaaacccttgcatttgtgctgccaatgttg
aggcatatcaaggaccagccagaggtggtagctggagatgggcctattgggcttataatg
gcaccgacgagggagcttgtacagcagatccacagtgatataaagaagtttgccaaggtg
cttggtatcaggtgtgtgcctgtgtatggaggttccggtgttgcccaacaaattagtgaa
ttgaagcggggcactgagattgttgtctgtactccaggcaggatgattgacatactttgc
acaagtggggggaaaattacaaatctgcgtagagtcacttatttggtcatggacgaagct
gatcgaatgtttgacatgggttttgaacctcaaattactcgaattgttcaaaatattcgg
ccagatcgccaaacagttctcttctctgccactttccctcgtcaggttgaagttttggcg
cgtaaggtgttaaacagacctgtggagatacaagttggtgggagaagtgttgtgaacacg
gacataacacagttggttgaggtgaggccggaaagtgataggttctttagattgttggaa
ttactgggggaatggtatgagaaaggaaaaattttgatatttgtccactcgcaggagaag
tgcgatgctttgttcagggatcttctcaggcatggttatgcttgcctatctcttcatggg
gccaaggatcagacagatcgcgaatccaccatttctgattttaagagcaatgtctgcaat
ttgctgattgcaactagtgttgctgccaggggattagatgtcaaggagcttgaattggtg
atcaactttgatgttccaaaccactatgaagattatgttcaccgcgttggtcgtacaggt
cgagctggcaggaaaggctgtgctatcacatttatctctgaggaagatgctagatatgca
cctgaccttgtaaaagcattagagctctctaagcaagctgttcctgatgatctgaaagct
gtagctgatagttttatgacaaaagtgaatcagggacttgagcaagcccatgggactggc
tatggtggaagtggttttaaatttaatgaagaggaagatgaagtgaggagagcagcaaag
aaagcacaggccaaagaatatggttttgaggaggacaaatcagattcggacgatgacaat
gaaggtatacggaaggcaggtggagacatatcacagcaggctgccttagctcagataatt
gctgctgcctctaaagtcagtacaccttctatgcaaacccccgtctctgcttcccaactg
cttcccaatggtggactacctgttacgttaccaggcgttattggtctaacaatacccgga
acagcgccagtagtgcctgggtctggtttgccagctgccaatgaggcggcaggggcggct
cgagcagcagcaattgcagctgctttcaacttacagcaaaatttggcgaagattcaagct
gatgcattgcctgaacattatgaagcggagttggagataaatgattttccccagaacgct
cgatggaaggttacccacaaggaaactttgggcccaatttcggagtggactggagctgct
attactaccaggggccagtatttccctccaggtcggattgcaggacctggagaacgaaag
ctttacttgttcattgagggccctactgagcaatccgtcaagaaagctaaatcagaatta
aaacgtgttttggaagacatcacgaaccaggcattacaactgccaggtggagcccagcca
ggcagataccaagttttataa
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