Corylus avellana (European hazelnut): 132190269
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Entry
132190269 CDS
T09426
Name
(RefSeq) probable pre-mRNA-splicing factor ATP-dependent RNA helicase DEAH5
KO
K12818
ATP-dependent RNA helicase DHX8/PRP22 [EC:
5.6.2.6
]
Organism
cave
Corylus avellana (European hazelnut)
Pathway
cave03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
cave00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
132190269
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
cave03041
]
132190269
Enzymes [BR:
cave01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
132190269
Spliceosome [BR:
cave03041
]
Complex C
Other components
Step II factors
132190269
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
OB_NTP_bind
HA2_C
S1
HA2_N
Helicase_C
DEAD
AAA_22
AAA_19
ABC_tran
AAA_30
nSTAND3
AAA_16
Flavi_DEAD
TsaE
T2SSE
Sigma54_activ_2
PhoH
Motif
Other DBs
NCBI-GeneID:
132190269
NCBI-ProteinID:
XP_059461190
LinkDB
All DBs
Position
ca8:23369253..23374050
Genome browser
AA seq
1223 aa
AA seq
DB search
MAPAPKDEGLKKLEFLSLVSKVCTELETHLGFGDKILAEFITDLGRNCETVDEFDAKLKE
NGAEMPDYFVRTLLTIIHAILPPKPKSEKDSKKESASDGRKAKYAALAISDNRERAKEIE
RELELETRERRGDREEREEEGEDRHRRRDRDRDRDRDRDRDRDRDGDRRDRRRDRYDRDE
RRRDRDNEEDEDDGRDYRSRERHRDRYEKPRREEENLDNRDRNRHEKPRREEENLDNRDR
NRHEKPRREEENLDNRDRNRRYQSDEPELYKVYKGRVSRVMDTGCFVQLNDLKGKEGLVH
VSQIATRRIGNAKDVVKRDQEVYVKVISISGQKLSLSMRDVDQHTGKDLLPLKKSSDEDT
MRANPSSGSKEGPVMRTGLSGIRILEENDTAPSRRPLKRMSSPEIWEAKQLIASGVLSVA
DYPTYDEEGDGLMYQEEGAEEELEIEMNEDEPSFLQGQSRYSSDMSPVKIFKNPEGSLSR
AAALQSALIKERREVREQQQRTMLDSIPKDLNRPWEDPMPETGERHLAQELRGVGLSAYD
MPEWKKDAYGKSISFGQRSKLSIQEQRQSLPIYKLKKELIQAVHDNQVLVVIGETGSGKT
TQVTQYLAEAGYTTRGKIGCTQPRRVAAMSVAKRVAEEFGCRLGEEVGYAIRFEDCTGPE
TVIKYMTDGMLLRELLIDENLSQYSVVMLDEAHERTIHTDVLFGLLKQLVKRRPELRLIV
TSATLDAEKFSGYFFNCNIFTIPGRTFPVEILYTKQPESDYLDAALITVLQIHLMEPEGD
ILLFLTGQEEIDFACQSLYERMKGLGGNVPELIILPVYSALPSEMQSRIFEPAPPGKRKV
VVATNIAEASLTIDGIFYVIDPGFAKQNVYNAKQGLDSLVITPISQASAKQRAGRAGRTG
PGKCYRLYTESAYRNEMSPTSIPEIQRINLGSTTLNMKAMGINDLLSFDFMDPPSPQALI
SAMEQLYSLGALDEEGLLTKLGRKMAEFPLDPPLSKMLLASVDLGCSDEILTIIAMIQTG
NIFYRPREKQAQADQKRAKFFQPEGDHLTLLTVYDAWKNNNFSGPWCFENFVQSRSLRRA
QDVRKQLLTVMDKYKLDVVSAGRNFMKIRKAITAGFFFHAARKDPQEGYRTLVENQPVYI
HPSSALFQRQPDWVIYHELVMTTKEYMREVTVIDPKWLVELAPRFFKVADPTKMSKRKRQ
ERIEPLYDRYHEPNSWRLSKRRA
NT seq
3672 nt
NT seq
+upstream
nt +downstream
nt
atggctcccgctcccaaagacgaaggtttgaagaagctcgagttcctctccctcgtctcc
aaggtctgcacggaactggaaacgcatctagggtttggtgacaaaatcctcgccgagttc
attaccgacctagggcggaactgcgagaccgtcgacgaattcgacgccaagctgaaggaa
aacggcgctgagatgcccgattacttcgtccgaacgcttctgacgataatccacgccatt
ctccctccgaagcccaagtcggagaaggattcgaagaaagagagcgcttcggatggtagg
aaggccaagtacgcggcgctggcgatctccgataatagggagagagctaaggagatcgag
agggaactcgagttggagacccgcgagcggcggggagacagagaagaacgcgaagaagaa
ggagaagacaggcatagacgaagggacagagacagagatagagatagagatagagacaga
gacagagacagagacggagatagaagagataggcgtagggatagatacgatagagatgag
aggcgtagagatagggataatgaagaagatgaggatgatggaagggattataggagtagg
gaaaggcacagggatcggtacgagaagcctaggagagaagaagagaatttggataataga
gatagaaatcggcacgagaagcctaggagagaagaagagaatttggataatagagataga
aatcggcacgagaagcctaggagagaagaagagaatttggataatagggatagaaatcgg
cggtaccaatcagatgagccggaattgtataaggtttacaagggcagggtttcgagagtg
atggacacgggctgcttcgtgcaattgaatgatctgaagggtaaggagggtttggttcac
gtttcgcagattgcgactcgtaggattggaaatgccaaggacgtagtgaagcgtgatcaa
gaagtttacgtgaaggtgatatcgatttcgggtcagaagctgagtctttctatgagggac
gtagatcagcatacgggtaaggatttgcttcccttgaagaagagctcggacgaggatacg
atgagggcaaacccatccagcgggtcgaaggaggggccagtgatgaggacggggctttcg
gggattaggattttggaggagaacgacaccgcgccctcacggagaccgttgaagaggatg
agttcaccggagatatgggaagctaagcaattgattgcttcaggtgttttgagcgttgcg
gactatccgacttatgatgaggaaggagatggattgatgtatcaagaagagggtgctgag
gaggagctcgagattgagatgaacgaggatgagccttcgttcttgcaagggcaaagcagg
tattcatctgatatgtcacctgtgaagattttcaagaacccagaaggttctttgagtcgt
gctgcggccctgcagtctgcgctgataaaggagcgtagagaagttagagaacagcaacag
aggacaatgttggactctattcccaaggatctgaatcgtccttgggaagaccctatgccg
gagacaggtgagaggcatctagcgcaggagctcaggggtgttggtttatcagcatatgac
atgccggagtggaagaaggatgcttatggaaaatccatcagttttgggcagaggtcgaag
ctctccattcaagaacaaaggcagagcttgccaatatacaagttaaagaaggaactcatc
caggctgtgcatgacaatcaggtcctggttgtaattggcgagactggttcgggtaagaca
actcaggtgactcaataccttgcagaagctggatacactaccaggggaaaaattggttgt
actcagccccgtagggtggctgcgatgtctgtggccaagagggttgctgaagagttcggt
tgtcggttgggtgaggaagttggatacgctattcgatttgaggattgtactggtccagag
acggtcatcaagtatatgacagatggtatgcttcttagggaacttttgattgatgagaac
ctttctcagtactctgttgttatgctcgacgaagcacatgagaggacaatacacacggat
gttctttttggattactcaagcaactagtgaaacggagacccgaacttcgtttgatcgtc
acgtctgccacgctggacgcagagaagttttcagggtatttcttcaattgtaatatattt
acaattcctggtagaacttttcctgtggagattctctacaccaaacagccggaaagtgat
tatctagatgcagctttaattactgtgttacagattcacttgatggaacctgaaggagac
atccttctcttcttgactggtcaagaggagattgattttgcctgccagtctctctatgag
aggatgaaagggctaggtggtaatgtcccagaattgattattctgccagtgtatagtgcg
cttcctagtgaaatgcagtcaaggatatttgaacctgcccctccagggaagaggaaagtg
gttgtggctacgaacattgctgaggcttctttgactattgatgggatattttacgtcatt
gatcctgggtttgcaaagcaaaatgtgtataacgcaaagcaagggctggattcactggtc
attactcctatttcacaagcatcagctaagcaacgagctgggcgtgctgggcgtacgggg
cctggcaaatgttaccgcctctacactgagagtgcataccgcaatgagatgtcccctact
tcaattcctgaaatccagaggataaatcttgggtctactacacttaacatgaaagctatg
gggataaatgatcttctgtcttttgatttcatggatccaccttcacctcaagctctcatt
tctgccatggaacagctgtacagtctaggagctcttgatgaggaggggcttctgaccaaa
ttgggccggaaaatggcagaatttcctcttgatccgccattatctaagatgctgcttgcc
agtgtggaccttggatgcagtgatgagattttgacaatcattgcaatgattcaaacggga
aatatcttctacaggcctagggagaaacaagcccaagcagatcagaagagagccaagttt
ttccagccagagggagaccatttgacattacttacagtttatgacgcttggaaaaataat
aacttttctgggccatggtgttttgagaactttgttcagtctagatccttgaggagggca
caggatgtcagaaaacagctactcaccgtcatggacaaatataaattagacgtcgtgagt
gcaggaaggaattttatgaagatcaggaaggcaattactgcaggattctttttccatgcg
gctagaaaggacccacaagagggctataggaccctagttgagaaccaaccagtttatatc
catccaagcagtgctcttttccagagacaacccgactgggtcatctaccatgagctggtg
atgactacaaaggagtacatgcgagaggtcacagttatagatcccaaatggcttgtggaa
ctggccccaagattcttcaaagtggcagatcctacaaagatgagcaagcgcaaaagacaa
gaaagaattgaaccgctttatgacagatatcacgaacctaactcttggcgtctgagtaaa
cgtcgtgcttga
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integrated database retrieval system
