Corylus avellana (European hazelnut): 132190423
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Entry
132190423 CDS
T09426
Name
(RefSeq) DNA ligase 4
KO
K10777
DNA ligase 4 [EC:
6.5.1.1
]
Organism
cave
Corylus avellana (European hazelnut)
Pathway
cave03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
cave00001
]
09120 Genetic Information Processing
09124 Replication and repair
03450 Non-homologous end-joining
132190423
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
cave03400
]
132190423
Enzymes [BR:
cave01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
132190423
DNA repair and recombination proteins [BR:
cave03400
]
Eukaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
DNA Ligase 4 complex
132190423
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_A_M
DNA_ligase_A_N
BRCT_2
BRCT
DNA_ligase_A_C
PTCB-BRCT
RNA_ligase
DNA_ligase_IV
Motif
Other DBs
NCBI-GeneID:
132190423
NCBI-ProteinID:
XP_059461395
LinkDB
All DBs
Position
ca8:16300883..16339103
Genome browser
AA seq
1165 aa
AA seq
DB search
MTETKFSVLCSLFTWMQRSKSSAKKSSKFRKFLDTFCHSGHYFSAIRLLLPSLDRERGTY
GLKESVLATCLIDALGMSRDSHDALRLVNWRKGGAQTGANAGNFSLVAAEVLQRRQGMAS
GGLTIKDVNDLLDRLASAENRAEKTSVLSTLINKTNAQEMKWIIMIILKDLKLGISEKSI
FHEFHPDAEDLFNVTCDLKLVCEKLRDRSQRHKRQDIEVGKAVRPQLAMRVANAAGAWKK
LHGKEVVVECKFDGDRIQIHKNGTEIHFFSRNFLDHSEYGHGMSDIIIQNVLADRCILDG
EMLVWDTSLNRFAEFGSNQEIAKAAKDGLDSDRQLCYIAFDILYVGDTSVIHQSLKERHE
LLRKVLKPLKGRLEILVPNGDLGLNSHCPSGEPCWSHIAHNVDDVERFFKETVENRDEGI
VLKDLGSKWEPSDRSGKWLKLKPDYIRAGSDLDVLIIGGYYGSGRRGGEVAQFLVGLAER
PAPNTYPRRFLSFCRVGTGLSDEELDAVATKLKPFFRKYEYPRKPPPSFYQVTNNSKERP
DVWVDSPEKSIILSITSDIRTIRSEVFAAPYSLRFPRIDRVRYDKPWHECLDVQSFVELV
HSSNGTTQRGTDYGGLKESRPKRMKFSKGERKNLSVVPSHLIQTDISDVMGGSSIFSNMM
FYFVNFPPTLSLDSLHKMVAENGGTFSMNLNNSVTHCVAADSKGIKYQAAKLHGDIIHYS
WVLDCCSQKKLLHLQPKYFLFLSGSSKKKLQEEIDEFSDSYYQDLDLAGIKQLLSNVDRY
EATKTIDYYKKKYCPKKKWSHFYGCCIYFRPSIPSLKPDWEVLLGLALRRLKLEVSMAGG
KVSHSIALATHLVVLSVPGFDVDFETLLKSFTSSEKHLLWNKGLHVVKSQWLEDCLERDQ
RLQEGPYSLKTIGVQDLEIVECNHDRHDQDLGAPAGLDNEEKQNMSPSLDLREQITDKTA
LEKPKTLASYEGIGKRKRGRPAGTSMKKGKTTMTQARRTRGRIGQRPAKICDNESDESLS
HDEKTRREENNIREGNHETVGTGSSEIQGTEIIEDSESSARGKAAEQEVEKDIGYGEWHD
KVPNVEMTKMHINSNDGERSEKLEVMADPVQAMLLDMIPSLGAKEVVTRERILNDEKPPL
DPNAEPTKKKKVSYKDVAGELLKDW
NT seq
3498 nt
NT seq
+upstream
nt +downstream
nt
atgacggagacgaagttcagcgtgctctgcagcctcttcacgtggatgcagcggagcaag
tcgtccgccaagaagagctccaagttccgcaagttcctcgacaccttttgccattccggc
cactatttcagcgccatccgactgctcctccccagcctcgatcgcgagcgcggcacctac
ggcctcaaggagtcggtgctcgccacctgcctcatcgacgccctcggcatgtcccgcgac
tcccacgacgccctccgcctcgtcaattggcgcaaaggcggcgcccaaaccggcgccaat
gccggaaacttctccctcgtcgccgccgaggtattgcagcgcaggcaagggatggcttct
ggtggattaacaatcaaggacgtgaacgacttgctcgatcgcttggcttctgctgaaaac
agggcagagaagacatcagttctttctactctgataaacaagacaaatgcacaggaaatg
aagtggattatcatgattattctaaaagatcttaagctgggaattagtgaaaagagcatt
tttcatgaattccatcctgatgctgaagacctgtttaatgtgacttgtgatctaaaattg
gtttgtgaaaagctgagggatcgaagtcaacggcataagcgccaggacattgaagttgga
aaagctgtgcgccctcaactagctatgagagtcgccaatgctgcaggtgcatggaaaaag
cttcatgggaaggaagtggttgttgaatgcaaatttgatggtgatcgcatccaaattcat
aagaatggaactgagatacacttcttctcaaggaactttcttgatcactctgagtatggg
catgggatgtcggacattatcatacaaaatgttctggctgataggtgtatacttgatggt
gaaatgttggtctgggatacatctttgaaccgctttgctgagtttggttcaaatcaggaa
atagccaaggcagcaaaggatggactagacagtgatcgacagttgtgttatattgcattt
gatattctttatgttggggataccagtgtaattcaccaaagcttgaaggagcgccatgag
cttttgcggaaagttttgaagcctttgaagggtcgtttggaaatcttagtacctaatggt
gaccttggtctaaatagtcactgcccttctggggaaccttgttggtcacatattgctcat
aatgtggatgatgttgaaaggttcttcaaagaaaccgttgagaatagagatgaagggatt
gtgttaaaggaccttggttccaaatgggaacctagtgatcggagtggaaagtggttgaag
ttgaagcctgactatattcgtgctggttctgatctggatgttcttatcatagggggatac
tatggctctggtcgtcgtggtggagaggtagctcaattcctggtcggccttgcagagcgt
ccagccccaaatacataccctaggcgatttctttccttctgcagagtgggtactgggctt
tcagatgaagagctggatgctgttgcaaccaaattgaagcctttttttaggaaatatgaa
tacccaaggaagccaccaccaagtttttatcaagtaacgaataactcgaaagaaagacca
gatgtttgggttgacagccctgagaaatcaataattctgtctattaccagtgatatccga
accataagatctgaggtatttgctgcaccgtatagcctgagatttccacgtattgaccga
gtgagatatgacaagccttggcatgaatgccttgatgtgcaatcttttgtagaacttgta
cattcaagcaatggtactacacaaaggggcacagattatggtggccttaaggaaagtaga
ccaaaacgcatgaaattctctaagggagagagaaagaacctctctgtcgttccttctcat
ttaattcagactgatatttctgacgttatggggggctcctcaatattttcgaatatgatg
ttttactttgttaattttccaccaaccctctctcttgattccttgcacaaaatggttgct
gagaatggagggactttctcaatgaatttgaataactcagttactcattgtgttgcagct
gatagcaaggggatcaagtatcaggctgcaaaacttcatggagatattattcattactct
tgggtattggattgttgctcacaaaagaagctcctccatttacagccaaagtacttcctc
ttcctttctggctcatcaaagaagaagttacaagaagaaattgatgaattttctgactca
tactaccaggatcttgatcttgcaggcatcaaacagctcttaagtaatgtggacagatat
gaggctacgaaaactatcgactattataagaaaaagtactgtccaaagaagaaatggtcc
cacttttatggctgctgcatttatttccgcccttcaataccatctttgaaaccagattgg
gaagttttgttgggacttgcattgaggaggttgaagcttgaagtttccatggctggagga
aaagtcagccacagtattgctcttgctacccatttggtagttttgtcagtaccaggtttt
gatgtagactttgaaactctattgaaaagtttcacttcatcagagaagcatcttttatgg
aacaaggggttgcatgttgtgaaatctcaatggttggaagactgcttggagagggaccaa
agattgcaagaaggaccatatagcttgaagaccattggggtgcaagatttggaaattgta
gagtgcaatcatgatagacatgaccaggatctaggagcccccgctggattggacaatgaa
gaaaaacagaatatgtccccttctcttgatttaagggaacagataactgataaaactgct
ttagaaaaacctaaaactttggcttcatacgaggggatcgggaaaaggaaaagaggaaga
cctgctggcacaagcatgaagaaaggaaaaacaactatgacccaagctcgaagaacacgg
ggacgtattggacagaggcctgctaaaatatgtgataatgaatcagatgaaagcttatct
catgacgagaagacacggagagaagagaacaacataagagaaggaaatcatgaaacggta
ggtacgggaagctcagaaatccaagggactgaaataatagaagattctgaatcatcagct
agaggcaaggcagcggagcaggaagttgaaaaagatattggatatggagagtggcatgat
aaagttccaaatgttgaaatgactaaaatgcatattaatagcaatgacggtgagaggtcg
gagaagttggaagttatggctgatccggttcaagccatgttgttggatatgattccgagc
cttggagcgaaggaagttgtgacgagagagagaattctcaatgatgagaaaccacccttg
gatcccaatgcagagcctacaaagaaaaagaaagtgagctacaaggatgttgctggtgag
ctgctaaaggattggtaa
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