Corynebacterium atypicum: CATYP_03570
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Entry
CATYP_03570 CDS
T03227
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
cax
Corynebacterium atypicum
Pathway
cax03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
cax00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
CATYP_03570
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
cax03400
]
CATYP_03570
Enzymes [BR:
cax01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
CATYP_03570
DNA repair and recombination proteins [BR:
cax03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
CATYP_03570
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
TRCF
UvrB_inter
Helicase_C
CarD_TRCF_RID
ResIII
AAA_22
RecG_dom3_C
DUF3638
Motif
Other DBs
NCBI-ProteinID:
AIG63890
LinkDB
All DBs
Position
753153..756842
Genome browser
AA seq
1229 aa
AA seq
DB search
MLAGLLRLAGTDPKLTGLVRNLGASRLYVTGIDQSRSWALGALALQVPLVAVTPTGRQAE
DLAAELKAMLGDKVGLFPSWETLPHERLSPGADIVGRRARVLDHIDELQVVVTAARGFCQ
PVLREAAGRKGLVLAEGTETDFSRLKDELVFRAYDHVDMVSRRGQFAVRGGILDVFPTTA
EYPVRVEFWGDEVTEIRQFSVADQRTIPEIDVAQVEIYPARELLITDEVAARAESLIAKH
PGNATLVELLTKLSQHTYADGMEAILPALTDSELVPLTELTRPGTHVVLLDPEKIRTRIH
DLEATDNEFLAAGWEAAAMGAAGPVAAEGLDTSAASYLTFEALEEHAESHGVPWWTFAPE
GMFAAAEEETLPLEFAAAPAPRGDLEKIEQMMGQLLEHTRHGGRAAFITPTHGLVGRMAE
RFGEHGIPTRNAGAGEVPGPGELVIYQALSHAGLVFPAVTGPDEAEAGGASAADTGQKDQ
SRPLVVVTETDLTGNRVGDIAGAKRRPARRRNRVDPLALKIGDFVVHETHGIGRFLKMAE
RTIKAGDESSRREYIVLEYAPAKRGQPADQLWVPMESLDLLSKYSGGESPTLSKMGGSDW
KNTKRKARAAVREIAGELIELYAKRQSASGHAFAPDTPWQREMEDNFAFVETEDQQAAID
AVKADMEKPVPMDRVIVGDVGYGKTEVAVRAAFKAVQDGRQVAVLVPTTLLAQQHLQTFS
ERMDGFPVTIKGLSRFTTAKDAKEIIRGLADGSVDIVIGTHRLLQTGVQWKDLGLIIVDE
EQRFGVEHKEHIKALRTHVDVLTMSATPIPRTLEMSMSGIREMSTILTPPEDRHPVLTYV
GPEEDKQVAAAIRRELLRDGQVFVIHNRVADIEKRASALRELVPEARVVVAHGQMSEDLL
ERTVQGFWDREYNVLVCTTIVETGLDIQNANTLIVENAHHMGLSQLHQLRGRVGRSRERG
YAYFLYPKGHTLTETSYDRLATIAQNNDLGAGMAVAMKDLEMRGAGNVLGAEQSGHIAGV
GFDLYMRLVGEAVETYRALATGQTVDATDGGPKEIRIDLPVDAHIPESYINSERLRLEVY
RAIAASENDQDLQLVVEEMEDRYGPVPDVVRRLLAVARLRHQARRAGVADIAVQGTRIKV
HPVELADSQQIRLKRLYPGSNYRAAAQAIQLSFPKAGRTITAPSLRDEELLQWLADFLSA
MFELETIDVRGGSPEGKKPRGGDVVSVSE
NT seq
3690 nt
NT seq
+upstream
nt +downstream
nt
atgcttgccgggctgctccggctagccggaaccgacccgaagctcaccggtctggtgcgc
aacctcggcgcgtcgcgtctgtatgtgacgggtatcgaccagtcgcgtagctgggcgctg
ggggctctggcgctccaggtgccgctggtggcggtgacgcctaccggtaggcaggccgag
gacctggctgccgagctcaaggcgatgctgggcgataaggtaggcctctttcccagttgg
gagacgctgccgcacgagcgtctttctccgggtgcggatatcgtcggccgccgcgctcgc
gtgctggatcacatcgacgagctgcaagtggtggtcacggcggcgcgggggttctgccaa
cctgtgctccgcgaggccgccgggcgaaagggcctggtgctcgccgaagggaccgagacg
gatttctcacgcctcaaagacgagctcgtgtttcgcgcctacgatcacgtcgatatggtc
tcgcgccgcggccagttcgcggtgcgcggcgggatcctcgacgtctttcctacgacggcg
gagtaccccgtgcgcgtggagttctggggcgacgaggtcactgagatccggcagttctcc
gtggcggatcagcgcaccatcccagagatcgacgtagcccaggttgagatctacccggcc
cgcgagctcctcatcaccgacgaggtcgcggcccgtgcagaaagcctgatcgccaagcat
ccgggcaacgctaccctggtggagcttttaaccaagctgtcccagcacacctatgccgac
ggcatggaggcgatcctgccggccttgaccgactcggagctggtgccgctcaccgagctc
acccgtcccggcacccacgtggtgctgttggacccggagaagatccgcactcgcatccac
gatctggaggctaccgacaacgagttcctcgccgctggttgggaggccgccgcgatgggc
gccgctggccccgtcgcagctgagggactggacacctccgctgcgtcttacctgaccttc
gaggccctcgaagaacacgccgagtcccacggcgtgccctggtggactttcgcgccggaa
ggcatgttcgccgccgccgaggaggaaaccctgccgctggagtttgcggccgccccggcg
ccgcgcggagacctagaaaagatcgaacagatgatggggcagctgctcgagcacactcgg
cacggcggccgggcggccttcatcacccccacccatgggctcgtcgggcggatggccgag
cgctttggggagcacggcattcccacccgcaacgcgggtgcaggcgaggtccccggcccc
ggggagctcgtgatctaccaggcgctctcccatgcggggttggtcttccccgcggtaact
ggccccgatgaagccgaggcgggcggggcgagcgccgcggatacggggcagaaggatcag
tctcgcccgctggtggtggtcactgagacggacctgaccggtaaccgcgtcggcgatatc
gctggtgccaagcgccggccggcccgccgccgcaaccgggtcgacccgctcgccttgaag
atcggtgactttgtggtgcatgagacccacggcatcggtcgcttcctcaagatggccgag
cgcaccatcaaggccggcgacgagtcctcccgacgtgagtacatcgtgttggaatacgcg
cctgccaagcgcgggcagcccgcggaccagctgtgggtgcccatggagtcgctggacctg
ctgagcaagtacagcgggggagagtccccgacgctgtccaagatgggcggcagcgactgg
aagaacactaagcgtaaggcgcgcgctgcggtccgcgagatcgccggcgagctgatcgag
ctctacgcgaagcggcagagcgcgtcggggcacgcctttgccccggacaccccctggcag
cgcgagatggaagataacttcgccttcgtcgagacggaggaccagcaggccgccatcgat
gcggtgaaggcggatatggaaaagccagtgccgatggaccgcgtcatcgtgggcgacgtg
ggatacggcaagacggaggtggccgtgcgtgccgccttcaaagcggtccaagatggcaga
caagtcgccgtgctcgtgcccaccaccttgctggcccagcagcacctgcagacgttctct
gagcgcatggatggcttcccggtgaccatcaagggcttaagccggtttactactgcaaag
gatgccaaggagatcattcggggcctggccgacggatcggtggacatcgtcatcggcacc
caccggttgctgcagacgggagtgcagtggaaggacctggggctgatcatcgtcgacgaa
gagcagcgctttggggtcgagcacaaggagcacatcaaggcgttgcgcacgcacgtcgac
gtgctcacgatgtcggctacgcccatcccgcgcaccctggagatgagcatgtccggcatc
cgcgagatgtcgaccatcctgactcctcccgaagaccgccacccggtgctgacctatgtg
ggcccggaggaggacaagcaggtcgccgccgccattcgccgcgagctcctgcgcgacggc
caggtgtttgtgatccacaacagggttgcggacattgagaagcgggcgagcgccttgcgc
gagctcgtccccgaggcccgtgtcgtggttgcacatggccagatgagcgaggacctgctg
gaacgtaccgtgcaggggttctgggatcgggagtacaacgtgctggtgtgcacgacgatc
gtggagacgggcctggacatccagaacgcgaacacgttgatcgttgagaacgctcaccac
atggggctctcgcagctgcaccagctgcgcgggcgtgtggggcgttcccgggagcgcggc
tacgcctactttctgtatccgaaggggcacacgctcaccgagacctcttacgatcggttg
gccacgatcgcgcagaacaacgacctcggcgcgggcatggcggtggcgatgaaggatcta
gagatgcgcggggcgggcaacgtcctaggcgccgagcagtccggccacattgctggcgtg
ggctttgacctctacatgcggctggtgggcgaggctgtggagacctaccgggctttggcc
acggggcagaccgtcgacgccacggacggcggccccaaggagattcggatagacctgccc
gtcgacgcgcacatcccggagagctacatcaactcggagcggttgcgcttggaggtgtat
cgggcgattgccgcgagcgaaaacgaccaggatctgcagctggtggttgaggagatggag
gatcgctacggcccggtgcccgacgtggtgcgccggctcttggcggtggctcggctgcgc
caccaggcgcggcgcgcgggggttgcggacatcgcggtgcagggcacccggatcaaggtg
cacccggttgagctcgccgattcccagcagatacgcctcaagcggctatatccgggatcg
aattaccgggcggctgcacaggcgatccagctgagctttcccaaggccgggcgcacgatc
accgcgcccagcttgcgtgacgaggagttgctgcagtggctcgcggacttcttgagcgcc
atgtttgagctggagactatcgacgtccgcggaggctcgcccgaaggcaaaaagccccgc
ggcggggatgtggtgagcgtgagcgagtaa
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