Caloranaerobacter azorensis: G3A45_12645
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Entry
G3A45_12645 CDS
T06467
Symbol
mfd
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
cazo
Caloranaerobacter azorensis
Pathway
cazo03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
cazo00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
G3A45_12645 (mfd)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
cazo03400
]
G3A45_12645 (mfd)
Enzymes [BR:
cazo01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
G3A45_12645 (mfd)
DNA repair and recombination proteins [BR:
cazo03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
G3A45_12645 (mfd)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TRCF
DEAD
UvrB_inter
CarD_TRCF_RID
Helicase_C
ResIII
AAA_22
SNF2-rel_dom
UB2H
SpaA
SLFN-g3_helicase
RecG_dom3_C
IstB_IS21
AA_kinase
MFD_D3
Motif
Other DBs
NCBI-ProteinID:
QIB28048
UniProt:
A0A6P1YH56
LinkDB
All DBs
Position
2473146..2476673
Genome browser
AA seq
1175 aa
AA seq
DB search
MFLDVFINSLKNSKQYNELIEFINNRKYPVSLYGLSEESLSHICYGLNQHTGRQVLIVTY
NELRAKRIVEDLKLFSSKGVELFPQREVVFYNVDAYSHGILYQRLRVIDKLIEGKPIIVV
ASIESIMDKVFNKEILSKYKAVLRYGDKIDLEELIKNLNILGYERVDMIEGKGQFSIRGG
IVDFYPITLENPVRIELFDDEIDSIRTFDIKTQRSIKNVSEVKIGPVKEIILEDEYREEI
VKRIEDDLTKTIKRMSNEKDSQLMIQKLTEKFKHYIELVNSGLNFDNIEPLIPYFPVEYK
SIVDYFAESALMIIDEPQRIEEKADTYLKSFRNKFLDFFERGEVLPKQESIYYDFDSLKE
KLSQRPCIVSTGLRKTSNIFEIKAAVNIISKSMQSFHNKIEFLVNEIKNLKYRGYKIIIL
SGVEDRGKRLVETLSEYGIECSFIDNRNVEIKSGQIFVLAGTISSGFEYPDLKFTIISDK
EIYGKSKKKRVKRYSKDTKRITSFTDLKPGDYVVHETHGIGVYVGIEQLKVQGVKKDYLS
IKYSGKDRLYVPVDQMDLIQKYIGADSIKPKVNKLGTGEWIKTKQKAKKAIENMAKELLE
LYAKRQTTKGFAFSKDQPWQKQFEDLFPYEETSDQLKCIEEIKRDMEKDKPMDRLLCGDV
GYGKTEVALRAAFKAVMDGKQVAFLVPTTILAQQHYNTIKERFSQFPVKVDMLSRFRTPT
HQKKILRDLKSGNLDIVVGTHRLLSNDVKFKDLGLLIIDEEQRFGVKHKETLKKLKESID
VLTLTATPIPRTLHMALVGIRDMSVIDEPPEERYPVQTYVMEYNESIIRDAIIKELNRDG
QVYFVYNRVQDIQQMAARLKKLVPEARIVVGHGQMSERQLERVMIDFLKREYDILVCTTI
IETGLDISNVNTLIVYDSDKMGLSQLYQLRGRVGRSDRIAYAYFTYEKDKVLSEVAEKRL
KAIKEFTEFGSGFKIAMRDLEIRGAGNLLGPEQHGHMASIGYDLYVKYLDETIKKLKGEI
REEDIETTIELNVDGYIPRYYIANEEQKIEIYKKISSIQSREDLVDVQEEIIDRFGDIPK
EVDNLLKISLIKSMCKKAKISSLTQIDNYIKIEFVKPDAITPQLINELLNSFGRRMSFDI
SKTPHIKYRLMKRMQEDILREVERVIQKISSFHEG
NT seq
3528 nt
NT seq
+upstream
nt +downstream
nt
ttgtttttggatgtctttattaattcgcttaagaattcaaagcaatataacgaattaata
gaatttataaacaatagaaaatatcctgtatctttatatggactatcagaagagagttta
tcacacatctgttatggactaaatcagcatacaggtagacaagttcttatagttacttat
aatgaacttagagctaagagaatagttgaagatttaaaattgttttcatctaaaggtgta
gaattgtttccgcagagggaagtcgttttttataatgttgatgcttatagtcatggtatt
ttatatcagagattaagggttatagataaactgatcgaaggtaaacctataattgttgta
gcttctattgaatcaataatggataaagtttttaataaagaaatattgagtaaatacaaa
gcagtattaagatatggggataagattgatttagaagaactaataaaaaatttaaatata
ttgggctatgaaagagtagatatgattgaagggaaaggtcaatttagcataagaggtggt
atagtagatttttaccctataactttagaaaatcctgtaagaatagaattgtttgatgat
gagattgattcgataagaacttttgatataaaaacccagaggtcgattaagaatgtttca
gaagttaaaataggtccagttaaagaaatcatattagaagatgaatatagagaagaaata
gtaaagcgaatagaagatgatttaacaaagaccataaaaagaatgagtaatgaaaaagat
agtcagttaatgattcagaaacttactgagaaatttaaacattatattgaattagttaat
tcaggattaaattttgacaatatagaacctcttataccttatttccctgttgaatataaa
agtatagtagattattttgccgaatcggcattaatgattatagatgaaccgcagaggata
gaagaaaaagcggacacttatttgaaaagttttagaaacaaatttttagatttttttgaa
agaggcgaagtattacctaaacaggagagtatttattatgattttgatagtttaaaagaa
aaattgagccaaaggccttgtattgtatcaacaggattaagaaagacttctaatattttt
gaaattaaggcagcggttaatattatatcaaaaagtatgcagtcatttcataacaaaata
gaatttttagttaacgaaataaaaaatttgaagtatagaggatataagataataatactt
tcaggagtagaagatagagggaaaaggctagttgaaactcttagtgagtacggaatagaa
tgcagttttatagataatcgtaatgtagaaataaagtctggacaaatttttgttttagca
gggactatcagtagtggatttgaatatccagatttaaaatttacgataatcagcgataaa
gaaatatatggaaaatctaaaaagaaaagagttaaaagatatagtaaagataccaagagg
ataacctcatttactgaccttaagccgggagattatgttgtacatgaaacacatggaata
ggtgtatatgtaggaatagagcaattaaaagttcaaggagtaaaaaaagattatttgagt
ataaaatattctggtaaagatagattatatgttcctgtagatcaaatggacttaatacaa
aaatatataggagcagattctataaaacctaaagtgaacaaacttggaacaggagaatgg
attaagactaaacaaaaagctaaaaaggcaattgaaaatatggctaaagagcttcttgaa
ctttatgcaaaaagacagactactaaagggttcgctttttcaaaggaccagccttggcag
aaacagtttgaagatttatttccttacgaagagactagcgaccaattaaagtgtatagaa
gagattaaacgagatatggaaaaagataaacctatggacaggttgttatgtggggatgta
ggatatggaaagacagaagtagctttaagagctgcatttaaagccgttatggatgggaaa
caagttgcgtttttagtacctacgactattttagctcagcagcattataatacaataaaa
gaaaggtttagccaatttcctgtcaaagtagatatgttgagtagattcaggacaccaact
catcaaaagaaaattttaagagatttaaaaagcgggaatttagacattgtagttggaaca
catagattgttatcaaatgatgtgaaatttaaggatttgggattgttgattatagatgag
gaacagagatttggagttaaacataaagagactttaaagaagttaaaggagtcgattgat
gtattaacgttgactgcgactccaataccaagaactctccatatggcattagttggtatt
agagatatgagtgttatcgatgaaccgccggaagagagatatccagtacaaacatacgtt
atggaatataatgagagcataatcagagatgcgataattaaggagttaaatagagacgga
caggtttattttgtatacaatagagtacaagatattcagcagatggcggctagattaaaa
aaattagtaccagaggctagaatagtagttggacatggacaaatgagcgaacgacagctt
gaaagggttatgatagattttttaaaaagagagtatgatatattagtatgtacgaccatt
attgaaacaggattggatatatctaatgtaaatactttaatagtttatgattcagataaa
atgggattatcgcaattgtatcagttaagaggtagagtaggaagaagtgataggatagca
tatgcatacttcacttatgaaaaagataaagtactgtctgaggttgctgaaaagcgttta
aaggcgataaaggaatttactgagtttggttcagggtttaaaatagctatgagagattta
gaaatacgaggagctggaaacttattaggacctgaacagcatgggcatatggcttcgatt
ggttatgatttatatgtaaagtatttagatgaaacgataaagaaattaaagggcgaaata
agagaagaagatatagaaactactatagagttaaatgtagatgggtatatacctagatac
tatatagctaatgaagaacaaaaaatagagatatataagaaaatatcatcaattcagagt
agagaggatttggtagatgttcaagaggaaataatagataggtttggggatatacctaaa
gaagttgataatttacttaaaatatcattaataaagtcaatgtgtaaaaaggctaaaata
agctcgttaactcagatagataattacatcaagatagaatttgttaagccagatgctatt
acaccacagcttattaatgagcttttaaatagttttggaaggcgcatgtcatttgatatt
tcaaaaactcctcatataaagtataggctaatgaaaagaatgcaagaagatatattaaga
gaagttgaacgagttattcaaaaaattagcagttttcatgaggggtaa
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integrated database retrieval system
