Serpentinimonas maccroryi: SMCB_0413
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Entry
SMCB_0413 CDS
T03627
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
cbab
Serpentinimonas maccroryi
Pathway
cbab03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
cbab00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
SMCB_0413
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
cbab03400
]
SMCB_0413
Enzymes [BR:
cbab01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
SMCB_0413
DNA repair and recombination proteins [BR:
cbab03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
SMCB_0413
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TRCF
DEAD
UvrB_inter
Helicase_C
CarD_TRCF_RID
MFD_D3
ResIII
UB2H
Glyco_tran_WecG
AAA_30
SNF2-rel_dom
ERCC3_RAD25_C
IstB_IS21
Motif
Other DBs
NCBI-ProteinID:
BAO82641
UniProt:
A0A060NJT0
LinkDB
All DBs
Position
complement(456221..459835)
Genome browser
AA seq
1204 aa
AA seq
DB search
MNLPPLSPGKRLHVPRPPSSADALWLAQLAERERGTGRLTAVVCADAADAQRLLEEIPFF
APTLRCALFPDWETLPYDSFSPHQDLISERLATLWRIVQRDRAQGADLVLVPATTALYRL
APPAFLAAYSFEFKQQQRLDASRLKAQLTLAGYQHVSQVVGPGEYAVRGSLIDLYPMGSA
VPYRIDLFDDEIDSIRTFDPDTQRSLYPVPEVRLLPGREFPLDETGRAKFRARWRELLEG
DPSRSRLYKDMGAGVASAGIEYYLPLFFDQTATVFDYLGSATTLVLHGELEPAFQRFALD
TAERHRLAQGDPERPPLPPETLFLDAEGFYLAAKALPQVALRPPKEPTSPSSLTEPSSPS
NPGGRPGTNPAPAAASQASATSPTGSSAFEPLPDLAAQRAADDPLERLKAHLARSPRRAL
LLAESEGRRATLLDFLRASGLNPPLFESLADFQASPAPIGLATAALASGFAWVQQGSAPS
GIDFVTETELFASQPGTRRRKKQEQVSDVEALIKDLSELQLGDPVVHSQHGIGRYRGLLN
LDLGEKNPDGSPVLQEFLHLEYAQAAVLYVPVSQLHQISRYTGVSADEAPLHRLGSGQWD
KARRKAAEQVRDAAAELLNLYARRAAREGHAFRFPAKDYEAFANDFGFEETPDQKAAIHA
VIQDLISPRPMDRLVCGDVGFGKTEVALRAAFVAVSGGKQVAFLAPTTLLAEQHYQTLQD
RFANWPVKIAELSRFRSAREITAALQGTAAGTVDIVVGTHKLLSEKTKFKNLGLLIIDEE
HRFGVRHKEAMKALRAEVDVLTLTATPIPRTLGLALEGLRDLSVIATAPQRRLSIKTFVR
NEGNGVIREAVLRELKRGGQVYFLHNEVETIENRKQKLEQLLPEARIAVAHGQLPERELE
RVMRDFVAQRHNLLLCSTIIETGIDVPSANTILISRADKFGLAQLHQLRGRVGRSHHQAY
AYLMVPEIDSLSKTAQQRLEAIGQMEALGSGFYLAMHDLEIRGAGEVLGENQSGNMLEVG
FQLYHEMLAEAVDALKAGREPDLLSPLGVTTDINLHAPALLPSDYCGDVHLRLSLYKKLA
SAKTSAQIDALLEEIVDRFGKLPPQAQTLIDVHRLRVLAAPYGVQKVDATPGLILIGFKP
NPPLDPQRIIDLVQKNRHIKLAGNDKLRIERALPEAKDRALLVRDVLRALGAPRAVPEPA
GVQG
NT seq
3615 nt
NT seq
+upstream
nt +downstream
nt
atgaacctgcccccactcagccccggcaagcgcttgcacgtgccccgcccccccagcagc
gccgacgccttgtggctggcgcagctggccgaacgcgaacgcggcaccggccggctcacc
gccgtggtctgcgccgacgccgccgacgcccagcgcctgctggaagaaatcccgtttttt
gcgcccacgctgcgctgcgctctgttcccggattgggaaaccctgccctacgacagcttt
tcgccgcaccaagacctgatctcggagcgcttggccacgctctggcgcatcgtgcagcgc
gaccgcgcccaaggtgccgatctggtgctggtgcccgccaccaccgcgctctaccggctg
gcgccgccggcctttctggccgcctacagcttcgagttcaagcaacagcaacggctcgat
gcgtcccgcctcaaggcccagctcacgctcgccggctaccagcacgtgagccaggtggtg
ggcccgggcgaatacgcggtgcgcggcagcctgatcgacctctaccccatgggctctgcg
gtgccctaccgcatcgacctgttcgacgacgagatcgactcgatccgcaccttcgacccc
gacacccagcgcagcctgtacccggtgcccgaggtgcggctgctgcccgggcgcgagttt
ccgctcgacgaaaccggccgcgccaagttccgcgcccgctggcgcgaactgctcgaaggc
gacccgagccgcagccgcctgtacaaagacatgggcgcgggcgtggccagcgccggcatc
gagtactacctgccgctgttttttgaccagaccgcgaccgtgttcgactacctcggcagc
gccaccacgctggtgctgcacggcgagctcgaaccggccttccagcgctttgcgctggac
accgccgagcgccaccgcctggcccaaggcgaccccgagcgcccgccgctgccgcccgag
accctgtttctggatgccgaaggcttctacctcgccgccaaagcgctgccccaagtggcg
ctgcgcccacccaaagagccgaccagcccgagcagcctaaccgaaccgtccagtccgtcc
aacccaggcggccggcccggcaccaacccagcgccagccgccgccagccaagcctccgcc
acgagtcccaccggctcgagcgccttcgagccgctgcccgacctggccgcccagcgcgcc
gccgacgacccgctcgagcgcctcaaagcgcacctggcgcgcagcccccggcgcgcgctg
ctgctggccgagagcgagggccgccgcgccaccttgctcgattttttgcgcgccagcggc
ctcaacccgccgctgttcgagtccttggccgacttccaagccagcccggcccccattggc
ctagccacggcggccttggccagcggctttgcgtgggtgcagcaaggcagcgcccccagc
ggcatcgacttcgtcaccgaaaccgagctctttgccagccagcccggcacccggcggcgc
aaaaagcaagagcaggtcagcgacgtcgaagcgctgatcaaagacctgagcgagctgcaa
ctgggcgacccggtggtacacagccagcacggcatcggccgctaccggggcttgctcaac
ctcgatctgggcgaaaaaaaccccgacggcagccccgtgctgcaagagtttttgcacctc
gagtacgcccaagccgccgtgctctacgtgccggtgagccaactgcaccagatcagccgc
tacaccggcgtgagcgccgacgaagcgccgctgcaccggctgggctcgggccagtgggat
aaagcgcggcgcaaagccgccgaacaggtgcgcgacgccgccgccgaactgctcaacctc
tacgcccgccgcgccgctcgcgagggccacgcctttcgcttcccggccaaagactacgaa
gccttcgccaacgacttcggcttcgaagaaacgcccgaccaaaaagccgccatccacgcc
gtgatccaagacctgatcagcccacgcccgatggaccggctggtctgcggcgacgtcggc
tttggcaagaccgaagtggcgctgcgcgccgccttcgtggcggtgagcggcggcaagcaa
gtggcctttctggcccccaccaccttgctggccgagcagcactaccagaccctgcaagac
cgctttgccaactggccggtgaagatcgccgaactgagccgctttcgcagtgcgcgcgaa
atcaccgccgccctgcaaggcaccgccgccggcaccgtggatatcgtcgtcggcacccac
aagctgctgagcgaaaaaacgaaattcaaaaacctcgggctgctcatcatcgacgaagag
caccgcttcggcgtgcgccacaaagaggccatgaaggcgctgcgcgccgaagtcgatgtg
ctcaccctcaccgccaccccgatcccgcgcaccctcgggctggcgctcgaagggctgcgc
gacctgagcgtgatcgccaccgcgccgcagcgccgcttgtccatcaaaaccttcgtgcgc
aacgaaggcaatggcgtgatccgcgaggccgtgctgcgcgagctcaagcgcggcgggcag
gtgtattttctgcacaacgaagtcgaaacgatcgaaaaccgcaagcaaaagctggaacag
ctgctgcccgaggcgcgcatcgccgtcgcccacggccagttgcccgagcgcgagctcgag
cgcgtgatgcgcgacttcgtggcccagcgccacaacctgctgctgtgctcgaccatcatc
gaaaccggcatcgacgtgcccagcgccaacaccatcctcatcagccgcgccgacaagttt
gggctggcgcagctgcaccagttgcgcggccgcgtcgggcgcagccaccaccaagcctac
gcctacctgatggtgcccgagatcgacagcctgagcaaaacggcgcagcagcggctcgaa
gccatcgggcagatggaggccttgggcagcggtttttacctcgctatgcacgacctcgaa
atccggggcgcgggcgaggtgctgggcgaaaaccagagcggcaacatgctcgaagtcggc
tttcagctctaccacgagatgctggccgaagcagtcgatgccctcaaggccgggcgcgaa
cccgatctgctcagccccttgggcgtgaccaccgacatcaacctgcacgccccggccctg
ctgcccagcgactactgcggcgacgtgcacctgcgcctgagcctgtacaaaaagctcgcc
agcgccaagaccagcgcgcagatcgacgccttgctcgaagaaatcgtggaccgctttggc
aagctgccgccgcaggcgcaaacgctgatcgacgtgcaccgcctgcgcgtgctcgccgcc
ccctacggcgtgcaaaaggtcgatgccacgccgggcctgatcctgatcggcttcaagccc
aacccgccgctagatccgcagcgcatcatcgacctggtgcaaaaaaaccgccacatcaaa
ctcgccggcaacgacaaactgcgcatcgagcgcgccctacccgaagccaaagaccgcgcg
ctactggtgcgcgatgtgctgcgcgcgctcggggccccgcgggccgtgccggagccggcg
ggggttcagggataa
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