Berryella intestinalis: JI75_02110
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Entry
JI75_02110 CDS
T03545
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
cbac
Berryella intestinalis
Pathway
cbac03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
cbac00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
JI75_02110
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
cbac03400
]
JI75_02110
Enzymes [BR:
cbac01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
JI75_02110
DNA repair and recombination proteins [BR:
cbac03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
JI75_02110
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
CarD_TRCF_RID
UvrB_inter
TRCF
ResIII
AAA_22
RecG_dom3_C
SecA_DEAD
AAA_30
FAF
Motif
Other DBs
NCBI-ProteinID:
AJC11653
UniProt:
A0A0A8B4C7
LinkDB
All DBs
Position
502907..506524
Genome browser
AA seq
1205 aa
AA seq
DB search
MLIDSLVYTLERSDCLGKFWGKLDAGDDATLGIASSARPFAVASRFVCAPQTTLVLVAGE
EAAVAFARSVAAYVGDERVLRFPERADYPFSPKRPDARVVAQRMEAAYALKSGRKVVVVA
SARALVRMLAPSKSDVCHPLSFSASTELADMGCGLSEFDDVARALEDRGFANTGELDGPG
TFCVRGGVIDVYPGNLVYPVRLDFFGDELDEIRRIVPTTGQTISALSSVDIYPVREFSCS
DKQRVRAIGELKRPARTNPHLRDLLERLEGGLGFDGADALLPYLYDTTVTLGSYAKEGVL
TALVEPRSLFDDAQHAIDEIYGKAKGSGVSLEGLFAEPGELDFGGGQRATYLSIMRVGSS
IDDELPVKRVEVAGHPDRLFGRLRQLVDDNYTVVFSAPNFRARQDMKLAFVENGLPIQER
LDVLDDGADALAEDGSGSGSPRSTGAFEDVSSSSPSSGKKTALSRESDARVSDEGEIEGL
RRRRLRRGVVNVVDVDIPLGMIIPKAKLAMISISDTQGASSRRPARRVDITEITFPYKPG
DYVVHAAHGIGHFVGLVRQEVGGTARDYLHIDYAEGDRLFVPVEQLDRVTRYVGPEGSDP
RLTRLNTSDWSRALNKARKATKKLAFDLVDVYARRAAVQGFRFGPDTPWQREMEESFPYQ
ETPDQLAAIADVKADMQSARPMDRLVCGDVGFGKTEVALRAAFKATQDGKQVMVLCPTTI
LAQQHFTNFKDRFEPFGVKVEVLSRFRTPAQQKKALEGFAEGTVDVMVGTHRLLSRDVNP
HDLGLVIIDEEQRFGVGHKEQMKNLREYIDVMTLSATPIPRTMQMSLSGVRDMSLILTPP
DERRPVSVHVGEWDPDLVAAAIARELDRKGQVYYVSNRVRSIEEAVARVQSAAGEARIGV
AHGQMDKDALERVMEEFSAGRLDVLVATTIIESGIDNPHTNTLIIEDAQRLGLAQMYQLK
GRVGRSSTQAYALFMFPDNVPLTEEALARLTALNEHQELGSGMRIAMRDLEIRGAGSMLG
AEQSGNMSAVGFDLFAQMLATAVNATREGDLKADVLPPALSDITVNVPGDAFLPEDYIPD
VDERVLWYRKIASASTLSAVEDVFGDLAEKRPDMPDEARNLLMKARIKAFAFEHRIDLVS
VVEGRLVLDPVDIPQDMMLGIRRAGGRYVADKRKLRLPLRYFDQDDLLESVFGFMEKLAG
GGSSR
NT seq
3618 nt
NT seq
+upstream
nt +downstream
nt
gtgcttatcgactcgcttgtctacacgctcgaacggtcggattgcctggggaagttctgg
gggaagctcgatgcgggagacgatgcgacgctgggtatcgcttcgtccgcccgcccgttt
gcggtggcgtcacgtttcgtctgcgcgccgcagaccacgctggttctcgttgccggggaa
gaggctgcggtggcgttcgcgcgcagcgtcgcggcctacgtgggcgacgagcgcgttttg
cgcttccccgagcgggcggactacccgttttcccccaagaggcccgacgcgcgcgtcgtc
gcgcagcgcatggaggccgcttatgcgctgaagagcggccgcaaggtcgtcgtggtggcc
tcggcgcgcgccctggtgcgcatgctggcgccgtctaagtccgacgtgtgccatccgctg
agcttttccgcctccaccgagctggccgacatgggttgcggtctgtccgagttcgacgac
gtcgcgcgggcgctcgaagatcggggtttcgccaacaccggcgagctcgacggtccgggg
accttctgcgtgcgcggcggcgtgatcgacgtctatcccggcaacctggtgtatcccgtg
cgcctcgacttcttcggagacgagcttgacgagatccgccgcatagtccctacgaccggg
cagaccatctcggcgctttcctcggtggacatctatccggtgcgcgagttctcgtgctcc
gataagcagcgcgttcgggcgatcggcgagctgaaacgccccgcgcgcaccaatccgcat
ttgcgcgacctgctcgaacggcttgaaggcggtctcggtttcgacggcgccgacgcgttg
cttccctatctgtacgacacgaccgtcacgttgggttcgtatgcgaaagaaggggtcctc
accgcgcttgtcgagccccgatcgctgttcgacgatgcccagcatgcgatcgacgagata
tacggcaaggcgaagggcagcggggtgtcgctcgaagggctgttcgccgaaccgggggag
cttgacttcggcggggggcagcgcgcgacctacctttcgatcatgcgcgtgggatcttcg
atcgacgacgagctgcccgtcaagcgggtcgaggtcgcggggcatcccgaccggctgttc
ggacgcttgcggcagttggtggacgacaactacacggtggtgttctccgcaccgaacttc
cgggcccgccaggatatgaaacttgcgttcgtagagaacggattgcccatacaggagcgc
ctcgacgtgctggacgacggcgccgacgcgctcgccgaggatggttccggctccggttcg
ccccggtcgaccggggctttcgaagacgtctcttcctcatcgccctcgtcgggcaagaaa
acggccctgtcgcgcgaatccgacgcgcgcgtttccgacgaaggggagatcgaggggctg
cgccggcggcgactgcggcgcggcgtggtgaacgtggtcgacgtcgatatccccttgggc
atgatcatccccaaggcgaagctcgccatgatcagcatctcggacacccagggcgcctct
tcgcgccggcccgcgcgccgcgtcgatatcaccgagatcacgtttccgtacaaacccggc
gactacgtggtgcatgccgcgcatggcatcgggcatttcgtcggcctcgttcgccaggag
gtgggcggtaccgcccgcgattacctgcatatcgactatgcagagggagatcgcctgttc
gttccggtcgagcagctcgaccgtgtgacgcgctacgttgggcccgagggctccgatccg
cgcctgacccgcctgaataccagcgactggtcccgcgcgctgaacaaggcgcgcaaggcg
acgaagaagctggcgttcgacctggtcgatgtgtatgctcgccgcgctgcggtgcagggc
ttcaggttcgggcccgacacgccttggcagcgcgagatggaagagtcgttcccataccag
gaaacccccgatcagctggccgctatcgcagatgtgaaggccgacatgcaaagcgcccgt
ccgatggaccgcctcgtgtgcggcgacgtggggttcggtaaaaccgaggtcgcgctgcgg
gcggctttcaaggcgacgcaggacggcaagcaggtcatggtgctctgtccgaccaccatc
ttggcccagcagcacttcaccaacttcaaagaccggttcgagcccttcggcgtgaaggtg
gaggtgctgtcgcgcttccgcacgccggcccagcagaaaaaggcgctcgaggggttcgcc
gagggaaccgtcgacgtgatggtgggcacccatcgcctgctgtcgcgcgatgtgaacccg
catgacctgggtcttgtcatcatcgacgaggagcagcgcttcggcgtgggtcacaaggag
cagatgaagaacctgcgcgagtacatcgacgtgatgacgctgtctgcgacgcccatcccg
cgcaccatgcagatgtctctgtcgggggtgcgcgacatgagcctgatcctcacgcctccc
gacgagcgccgcccggtttcggtccatgtgggcgaatgggatcccgacctggtggcagcg
gccatcgcacgcgagctcgaccggaagggccaggtgtactacgtgtccaaccgcgtgcgc
tcgatcgaggaagcggtagcgcgcgtccagtccgcggcgggggaggcccgcatcggggtg
gcgcacgggcagatggacaaagacgcgctcgagcgcgtgatggaggagttttcggccggt
cggctcgacgtgctggtcgccacgaccatcattgaaagcgggatcgacaacccccatacg
aacacccttatcatcgaagatgctcagcgtctcggcctggctcagatgtaccagctcaag
gggcgcgtagggcgctcgtcgactcaggcgtacgcgctgttcatgttccccgacaacgtt
cctttgaccgaggaggcgcttgcgcgcctgaccgcgctaaacgagcatcaggagctgggg
agcggcatgcgcatcgccatgcgcgacctggagatccgtggagcgggcagcatgctggga
gccgagcagagcggcaatatgtcggcggtgggcttcgatctgttcgcccagatgctggcc
acggcggtgaacgcgacgcgcgagggcgacctgaaagccgacgtgctgcccccggcgctg
tccgatatcaccgtgaacgttccaggggatgcgttcctacccgaagattacattcccgat
gtggatgagcgcgtgctgtggtatcgcaagatcgcgtcggcgtcgaccctgtccgcggtg
gaagacgtgttcggcgatttggcggagaagcgcccggacatgcccgacgaggcgcgcaac
ctcctgatgaaagcgcgcatcaaggcgtttgccttcgagcaccgcatcgatctggtatcg
gtggtggaggggcgcctggtgctcgacccggtcgacattccccaggatatgatgctgggc
atccgccgggcgggcggccgctacgttgcggacaagagaaagctcaggttgccgctgcgg
tatttcgatcaggacgatctgctggagtcggtgttcgggtttatggagaagctagcgggc
ggagggtcttcgcggtag
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integrated database retrieval system
