KEGG   Chitinophaga caeni: COR50_02165
Entry
COR50_02165       CDS       T05360                                 
Name
(GenBank) RNA polymerase subunit sigma-70
  KO
K23514  RNA polymerase sigma-19 factor, ECF subfamily
Organism
cbae  Chitinophaga caeni
Pathway
cbae02020  Two-component system
Brite
KEGG Orthology (KO) [BR:cbae00001]
 09130 Environmental Information Processing
  09132 Signal transduction
   02020 Two-component system
    COR50_02165
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03021 Transcription machinery [BR:cbae03021]
    COR50_02165
Transcription machinery [BR:cbae03021]
 Prokaryotic type
  Bacterial type
   RNA polymerase
    Sigma factors
     COR50_02165
SSDB
Motif
Pfam: Sigma70_r4_2 Sigma70_r2 GerE Sigma70_ECF Sigma70_r4 HTH_24 HTH_23 HTH_38 HTH_40 Pneumo_M2 HTH_11 Terminase_5 HTH_AsnC-type HTH_30 DUF6650 HTH_36 HTH_Tnp_ISL3 HTH_28
Other DBs
NCBI-ProteinID: ATL46062
UniProt: A0A291QQA8
LinkDB
Position
535178..535774
AA seq 198 aa
MLLILQHLPSMTVTEDIALLSLVKDGHHDAFKVLYDRYAGALIQFAYSKTGDTEDAKDAV
QEVFIWLWQHKNQLQFNHNQLSIEAYLKTAVKNKILNLIDKKLRQQNYSDAAMQQFLSEI
PSDHSVNAKELQAIIQLEINAMPAKMREIFELSRDNGYSNKQIAGKLDLSEQTVKNQLQH
AKQRLKLKLSHYLASSLF
NT seq 597 nt   +upstreamnt  +downstreamnt
atgctgttaattttacagcatctacctagcatgacagtaactgaagatatagcactcctc
tccctggtcaaggatggtcaccatgatgcatttaaagtattatatgatcgctatgccggt
gcattgatccaatttgcatattccaaaaccggggatacagaagatgctaaggatgcggta
caggaagtgtttatttggttatggcaacataagaatcaattacaattcaatcataaccaa
ttatcaattgaggcttatttaaaaaccgctgttaaaaataaaatcctcaacctcatcgat
aaaaagctccgccaacaaaattattctgacgcagctatgcagcaattcctctcggaaatc
cctagcgatcatagcgtaaatgccaaggaattacaagcgatcatacagctagaaatcaat
gcaatgcctgccaagatgcgcgaaatatttgagctcagccgcgacaatggctatagcaac
aaacagattgccggtaagctcgatctctccgaacaaacggtcaaaaatcaactacagcat
gccaagcaaagattaaaattgaagttatcccattacttggcgtccagcttattttaa

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