Cellulophaga baltica NN016038: M667_06720
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Entry
M667_06720 CDS
T03562
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
cbal
Cellulophaga baltica NN016038
Pathway
cbal03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
cbal00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
M667_06720
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
cbal03400
]
M667_06720
Enzymes [BR:
cbal01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
M667_06720
DNA repair and recombination proteins [BR:
cbal03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
M667_06720
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UvrB_inter
TRCF
DEAD
Helicase_C
CarD_TRCF_RID
ResIII
RecG_dom3_C
UB2H
Motif
Other DBs
NCBI-ProteinID:
AIY12927
LinkDB
All DBs
Position
complement(1568885..1572262)
Genome browser
AA seq
1125 aa
AA seq
DB search
MSQKIIQQLYEQSPQLQKLRTAISNFEHTKGTINIKGLIGSSLSFVLTDAFKTAKQPFLL
IFNDKEEAAYHLNDLEQMIGEKDVLFYPGSYRRPYQIEETDNANVLLRAEVLNRINSRKK
PAVIVTYPDALFEKVVTRKELDKNTLKIKIEDSLSLDFLNEVLFEYKFKRVDFVTEPGEF
SVRGGIVDVFSFSNDEPYRLEFFGDEVESIRTFDVETQLSLEKLNKITIIPNVENKFLDE
SRESFLQYIASNTLIFNSDIDILLDRLDSFFEKATEAFSKLSTEIKHAEPKALFVDSTLF
KKELEAFSLIIGGNPSQKSIEEEIQFNTRPQPSFNKKFDLLIDSLNEQEKAGFTNYIFCS
TEQQAQRFHDIFDEVGKKVHYKTVVYSLFQGFIDVDLKITCFTDHQIFERYHKFHVKNGY
SKKQAITLKELTRLDIGDYVTHMDHGVGKFGGLQKIDVEGKKQEAIKLVYGERDILYVSI
HSLHKISKFTGKDGTPPKIYKLGSGAWKKVKEKAKSRVKKIAFDLIQVYAKRRSEKGFQY
APDGYLQHELEASFIYEDTPDQSKATEDIKRDMESERPMDRLICGDVGFGKTEVAIRAAF
KAVANGKQVAVLVPTTILAFQHSRTFSERLKDMPVTVDYLNRFRTAKEKKETLEKLADGK
VDIIIGTHQLVNKNVRFKDLGLLIVDEEQKFGVAVKDKLKSIKENVDVLTLTATPIPRTL
QFSLMAARDLSVINTAPPNRYPIQSDVIRFSEETIRDAVSYEIQRGGQVFFIHNRVENIK
EVAGLLQRLVPDAKIGIGHGQMDGKKLESLMLAFINGEFDVLVSTTIIESGLDVSNANTI
FINNANNFGLSDLHQMRGRVGRSNKKAFCYFITPPYEVMTSDARKRIEALEQFTELGSGF
NIAMKDLEIRGAGDILGGEQSGFINDIGFDAYQKILAEAVDELKENEFKDLYEEIDGREH
EKVFVKETQIDADFELLFPDDYINNITERLNLYTALNQITDEEGLKKFELDLIDRFGELP
IEAEDLLNSVRIKWIANAIGLEKIVMKQGKMIGYFIADQQSAFYQSANFTSVLQFVQAHP
KLCKIKEKQTRNGLRLLLVFENIRSIDKAYLAMQPFEKENKLASN
NT seq
3378 nt
NT seq
+upstream
nt +downstream
nt
ttgagccaaaaaatcattcaacaactctacgaacagtctccgcaattgcagaaactgcgc
actgctatttccaattttgaacatacaaaaggtactatcaacataaaaggtctcatagga
tcttccttatcgtttgtgttaaccgatgcttttaagaccgcaaagcagccttttctttta
atttttaacgacaaagaagaagcggcgtatcatttgaacgatctggaacaaatgattggt
gaaaaagatgtgctattctatccgggaagctaccgtagaccttatcaaattgaagaaacc
gacaatgcaaatgttttactacgggccgaagttttaaaccgaattaattcgcgtaagaaa
cccgcagttattgtcacgtatccagatgctctctttgaaaaagtagtcaccagaaaagag
ttagataaaaacacgttaaaaataaaaattgaagattctttatcgctcgattttttaaac
gaagtgctcttcgaatataaatttaaacgagtagattttgtcacagagccaggagaattt
tctgttcgtgggggtatcgtagatgtattctctttttctaatgatgaaccctatcgttta
gaattttttggtgatgaagtagaaagcatcagaacctttgatgtagaaacacaactttcg
cttgaaaaattaaacaagattaccattattcccaatgtagaaaacaaatttttagatgaa
tctagagagagttttcttcaatatatcgcatcaaacactttaatttttaacagtgatatt
gatattttactagaccgcttagattcttttttcgagaaagccacagaagctttcagcaag
ctctctacagaaattaaacatgcagaaccaaaagccctctttgtagattctaccttattt
aaaaaagaattagaggcttttagtttaattattggcggcaacccttcgcaaaaaagtatc
gaagaagaaattcaattcaacacaagacctcagccttctttcaataaaaagttcgattta
cttattgatagtttaaacgaacaagaaaaagctgggtttactaattatattttttgctcc
acagaacaacaagcgcaacgctttcatgatatttttgatgaagttggaaaaaaagtacat
tacaaaacggtagtctattctctttttcaaggttttatagatgtcgatttaaaaataacc
tgttttacagatcatcaaatttttgagcgctaccataaatttcatgtgaaaaatggctac
tctaagaaacaagccattacgcttaaagaacttactcgtttagatattggcgactatgta
acccacatggatcatggtgttggaaaatttggaggcttacaaaaaatagatgtcgaaggt
aaaaagcaagaggccataaaattagtatatggcgagcgtgatattttgtatgtcagcatt
cattctctacataaaatatctaagttcacaggcaaagatggtacgcctcccaaaatatac
aaacttggttctggtgcttggaagaaagtaaaagaaaaagcgaagtctagagttaagaaa
attgcttttgatttaattcaagtctatgccaaacgtaggtcagaaaaaggatttcaatat
gctcccgatggctacttacaacatgaattagaagcttccttcatctacgaagacacgcca
gaccagagtaaagctactgaagacattaagcgcgatatggaaagtgagcgaccaatggat
cgtttaatttgtggggatgtaggttttggaaaaacagaggtggctattagagctgccttt
aaagcggtagcaaatggcaagcaagtagccgttttagtacccacaactattcttgcattt
cagcatagcagaacatttagtgaacgtctaaaagatatgccagtaacggtagattattta
aacagatttagaactgctaaagagaaaaaagaaacacttgaaaaattagctgacggtaaa
gttgatatcattataggtacccaccaactggtaaataaaaacgtgagatttaaagactta
ggcttattaattgttgatgaagagcagaagtttggcgttgccgtaaaagataaactaaag
tctattaaggagaatgtagatgtcttaaccttaacggccactcctatcccgagaacgtta
caatttagtttaatggccgctcgtgatttatcggttataaatacagcaccaccaaacaga
tatcctattcagagtgatgttattcgcttttctgaagaaaccattcgggatgcggttagt
tatgaaattcaacgtggaggacaagtatttttcatccataaccgtgtagaaaacatcaag
gaagttgctggtttattacagcgtttagtgcctgatgccaaaattggtattggtcacggc
caaatggatggtaaaaagttagagagcctaatgcttgcttttatcaatggagagtttgat
gtcttagtgtctacaaccattatagaaagcggattagatgtatctaatgccaataccatt
tttataaataatgccaataattttggcttgagcgatttgcatcaaatgcgtggtagagtt
gggcgtagtaacaaaaaggcgttctgttactttatcactccgccgtatgaggtcatgacc
tctgatgcccgcaaacgtattgaagccttagagcaatttacagaattaggtagcggattt
aatatcgccatgaaagatttagaaattcgcggtgcaggagatattcttggtggtgaacaa
agcggatttataaatgatattggttttgatgcctatcaaaaaatattagcagaagctgtt
gatgaactaaaagaaaatgagtttaaagatctatatgaggagatagatgggcgcgaacat
gaaaaggtcttcgtaaaagaaactcagattgatgctgattttgaattgctattccctgat
gactatatcaataatattacagagcgtttaaatttatataccgcactaaatcaaattacc
gatgaagaaggcttaaagaaatttgaattggatttaatagatcgttttggcgagttgcca
attgaagcagaggacttattaaattctgttcgtataaaatggatagccaatgctattggt
ttggaaaaaattgtcatgaagcaaggaaaaatgataggctattttattgctgaccaacaa
tctgcattctatcaaagcgctaattttactagcgttttacaatttgtacaagcgcatcct
aaattatgtaagattaaagaaaagcaaactagaaacggactccgattgctattagttttt
gaaaacataagatctatagacaaagcatatttagccatgcaaccttttgaaaaagaaaat
aaattagcttcaaattaa
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