Cellulophaga baltica NN016038: M667_13175
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Entry
M667_13175 CDS
T03562
Name
(GenBank) ATP-dependent DNA ligase
KO
K01971
bifunctional non-homologous end joining protein LigD [EC:
6.5.1.1
]
Organism
cbal
Cellulophaga baltica NN016038
Pathway
cbal03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
cbal00001
]
09120 Genetic Information Processing
09124 Replication and repair
03450 Non-homologous end-joining
M667_13175
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
cbal03400
]
M667_13175
Enzymes [BR:
cbal01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
M667_13175
DNA repair and recombination proteins [BR:
cbal03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
Two-component NHEJ DNA repair complex
M667_13175
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LigD_Prim-Pol
LigD_N
DNA_ligase_A_M
DNA_ligase_A_C
mRNA_cap_enzyme
RNA_ligase
DNA_primase_S
Motif
Other DBs
NCBI-ProteinID:
AIY14072
LinkDB
All DBs
Position
complement(3039673..3042099)
Genome browser
AA seq
808 aa
AA seq
DB search
MSLKKYYEKRDFENTPEPKGVLQPISQNQRFVIQRHAASRLHYDLRLEINGTLKSWAIPK
GPSMNPNDKRLAVRTEDHPLEYLTFYGTIPKGNYGAGNMIIWDTGTFEIDITETDKPLSE
QLAIGNIKLKFYGKKIGGRFALVRTSAKNDTEQWLLLKKKDDFAISTFYDAEILVPLSET
RTKKFTTQLKLGSIIQPMLASTSKKIFNDPNYIYELKWDGYRVISHINNTKVLLQSRNGI
NYNSKFSKLYDELSTIEHDVILDGEVVLVDKNGVSKFAELQNYPNSKGELRYYVFDMLFL
NGHSMLDLKLIERKSLILDVIGGLNIVQYCDHIEGMGTALYEKAIEVGMEGVMAKEKSSN
YVVGSRTEKWLKVKSIQSTDAIICGYTESTNSPELVGSLILGQYENNILKYIGNCGSGFT
DKSRRELQMLLSNYEISTSVFDKKIPLKGRKAHWTQPILECEVTFSERTKKNLLRNPVLK
RIKSEIPKLNSEPNTLAVQKKKIFSSKDIITIDGLKVPISNLDKIYWPESNLTKYDLIDY
YLNVSEYILPHLIDRPQNLHRHPNGIDQESFYQKDNEYLPDWFETISIYSKSSEREINYL
LCQNAASLIYMANLGCIEINPWSSRKLNLDYPDYGIIDLDPPKNMNFKKVILVAKAFHQI
LIDLNIESFCKVSGSKGIHIYLPMGHRYTYEEVRNFIKLLCHLVEERLPELTTLERTISK
RKGKIYLDYLQNRRGHTIASVHSVRPIMKAPVSAPVHWDELDGDLDPRKFLMKGYIKRLE
EIGDLFNGVSTSDFDIASTLNKLDATLN
NT seq
2427 nt
NT seq
+upstream
nt +downstream
nt
gtgagcttaaaaaagtattacgagaaaagagattttgagaacaccccagagcctaaaggg
gtgctacagcctatttctcaaaatcaacgtttcgttatacaacgccatgccgcaagtaga
ttgcattatgatctgcggttagaaataaatggcacgctaaaaagttgggcaataccaaaa
ggaccttctatgaatccaaacgacaaacgtttggcagttagaaccgaagatcacccgtta
gaatatttaactttttacggcactatacccaagggtaattatggcgctgggaacatgatt
atttgggatacaggtacttttgaaatagacatcacagaaacagataaaccgctttcggaa
caactggcaatcggtaatattaaattgaagttttacggtaaaaaaattggcggtcgtttt
gccctagttcgtacctcagctaaaaacgatacagagcaatggctgttacttaaaaagaaa
gatgacttcgcaatttctactttttacgatgcagaaatattagtgccgttatctgaaact
agaacaaaaaaatttacaacccagttaaaactaggttcgataatacagcctatgttggca
tctacctctaaaaagatatttaatgaccctaactatatatatgagcttaaatgggacggt
tacagagttatctcgcacataaacaacactaaagttttattacaatcaagaaacggtatt
aattacaattcaaagttttcaaaattatatgatgaactctctaccatagaacatgatgtc
atcttagatggcgaagtggttcttgtagacaagaacggtgtttcaaaatttgcagaacta
caaaattaccccaatagcaagggtgaattacgctattatgtttttgacatgttatttcta
aacggtcatagtatgcttgacctaaagttgattgaaagaaaaagtcttattctagatgtc
atcggtggtctaaacattgttcagtattgtgatcatattgaaggtatgggaactgcttta
tatgaaaaagcaatagaagtaggtatggagggtgttatggccaaagaaaaaagttctaat
tatgttgtaggatcaagaacagaaaaatggctaaaagtaaagtctattcaaagtaccgat
gccattatttgcggttataccgaatctacaaatagtcctgaattagttggttcgttaatt
cttggtcagtacgaaaacaatatattgaaatatataggcaattgcggctcgggctttaca
gataaaagtcgcagagaactgcaaatgctgctctctaattatgagatcagtaccagtgta
ttcgataaaaaaataccattaaaaggaagaaaagcgcattggacacaacccatattagaa
tgtgaggtcaccttttcagaacgcacaaagaaaaatttacttagaaatcctgttttgaaa
cggataaaaagtgaaatcccaaaattaaattctgagccgaataccctggcggtgcaaaag
aaaaagatattttcttcgaaagatataattactatcgatggcttaaaagtacccattagt
aatttggataaaatttattggccagaatcaaaccttaccaaatatgatttaattgattat
tacctaaacgtttctgaatacattttaccacatttaatagatagaccgcaaaatttacat
cgacaccctaacggcattgatcaagaaagtttttaccaaaaggataatgaatatttgccc
gattggtttgaaactatctctatttactcaaaatcttctgaaagggaaataaactattta
ctgtgtcaaaatgctgcttcattaatctatatggcaaatttgggttgtatcgaaatcaat
ccgtggagctcaagaaagttaaatttagattatcccgattacggaattatcgatttagac
cctccgaagaacatgaattttaaaaaggtaattctggtagcgaaggcattccatcaaatt
ttgatcgacctaaacatcgagagcttctgcaaagtatctggttctaagggtattcatatt
tatctacctatggggcatagatacacctatgaagaagttagaaattttattaaactgcta
tgtcatttggtagaagaacgtttgcctgagcttactaccttagaacgcaccattagcaaa
agaaaaggtaaaatttacctagactatttacagaatcgcagagggcatactattgcatcg
gttcactcggtaagacctattatgaaagcacctgtttcagcacccgtacattgggatgaa
ttagatggcgaccttgatccacgaaaatttcttatgaagggatacatcaaaagattagaa
gaaataggcgatttatttaatggtgtatctacgtcagattttgatatagcttcgacctta
aataaattagatgctacacttaattaa
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