Marnyiella aurantia: H1R16_08700
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Entry
H1R16_08700 CDS
T08940
Symbol
mfd
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
cbau
Marnyiella aurantia
Pathway
cbau03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
cbau00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
H1R16_08700 (mfd)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
cbau03400
]
H1R16_08700 (mfd)
Enzymes [BR:
cbau01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
H1R16_08700 (mfd)
DNA repair and recombination proteins [BR:
cbau03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
H1R16_08700 (mfd)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
TRCF
Helicase_C
UvrB_inter
CarD_TRCF_RID
ResIII
RecG_dom3_C
Motif
Other DBs
NCBI-ProteinID:
QMS97796
UniProt:
A0A7D7LP26
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All DBs
Position
1885920..1889273
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AA seq
1117 aa
AA seq
DB search
MELKNISDGLLPELLRLNFGETLFTELEKNRTVTVKGYAGSAPSVLAAEYFIVHKKTVLF
LVNDKEEGLYITAEMEELVGQENVLYFPPSYLEPYQVEKVQNANLVLRTEVLNALNSASK
ARVIVAPFAALSEKVLQQDDFKAITHTVKVGDLLDFEFLLELLTQYDFHQTDFVSEPGEF
SLRGGILDVFSYSGEQPYRITFFGSEVESIKIFDLETQLSKSSVPEFQLVSNMNFTASGT
KISFFDLLQTDSIVISKDAYLGIKRIRDFFAKAEQNFGELSTTLKHQPPAELFISETVLT
EKISSFALLDFTKQQFFTSGLLQINQQPQPVFNKNFEMLAHDLKEKKALGYQTWISFSSE
KQKDRLESILEELNHDVSFRSFKSELHEGFVDADLKISVYTDHQIFDRFQRFKAKNNFAK
SEQLTLKDMMSLKVGDYIAHIDHGIGKFMGLVKINNNGKVQECFKLVYKNQDLLYVSIHS
LDKISKYNGPDGKEIVLSKLGSPAWKSLKQKTKAKVKQIAFDLIKLYAQRKTAKGFSFTP
DSYLQNELEASFIYEDTPDQEKATNDVKKDMEAQTVMDRLVCGDVGFGKTEVAIRAAFKA
ATDGKQVAMLVPTTILAFQHFRSFQERLKDFPVEISYMNRFRTAKQKAETLAGLKDGKLD
IVIGTHQLVSDKVKFKDLGLLIIDEEHKFGVSVKDKLKTMKANVDTLTLTATPIPRTLQF
SLMAARDLSVIKTPPPNRQPVETHIVGFDEELIRDAVSYEIQRDGQVFFINNRIENLKDI
AGLIQRLVPDAKVITGHGQMEGKQLEQNVLDFMNGKYDVLVSTTIVESGVDVPNANTIFI
NDAQRFGMADLHQMRGRVGRSNRKAFCYLITPPFDMVTSDARKRLEAIEQFSDLGSGFQI
AMKDLEIRGAGDLLGAEQSGFINEMGFETYQKIMQEALEELQHNEEFEDLFENEEDRRKL
ISTAKEVNIDTDLELMLPDSYVQSTEERLSLYQRLADVKSAADLAVFENELTDRFGALPP
EARNLLKSVELKWLAAEVGFDKLIVKNGVFLGYFPANPQDKFYQSDKFRHIITYLTQNPA
EATLKEKNTSDGTQLMMRKEKVKNVDEVTAVLERILN
NT seq
3354 nt
NT seq
+upstream
nt +downstream
nt
atggaattaaaaaacatcagtgatggtttattgcctgaactcctcaggttaaattttggc
gaaacactttttactgaacttgagaagaacaggacggtaactgtgaaaggatatgccggt
tctgcaccctctgtgttggctgccgaatattttatcgtacataagaaaacagttcttttc
cttgttaatgacaaagaggaggggttatatatcaccgccgagatggaagaactggtggga
caggagaatgtgctttacttcccgccgtcgtatcttgagccctatcaggtggagaaagtc
cagaacgcaaacctcgtactgcgaactgaagttctgaatgcacttaactcggcgtccaaa
gcgcgtgtaattgtagcaccttttgctgctttgagtgagaaagtacttcaacaggatgat
tttaaagctattacccatactgtaaaggtgggagatcttctggattttgaatttttactg
gaactgcttacccagtacgatttccatcagactgatttcgtgtcagaacccggagaattt
tcactcaggggcgggatccttgatgtcttttcctattccggggagcagccttaccgtatc
acgtttttcggcagtgaagtggagagtatcaaaatttttgatctggaaacccagctttcc
aagtcttcggtccctgaatttcaattggtatccaatatgaatttcacagcgtccggaacg
aagatttcctttttcgacctgctgcaaaccgattcaatagtgatttcgaaagatgcgtat
ctcggtatcaagagaatcagggatttttttgccaaagcagaacagaattttggtgagctg
agtacaaccctgaaacaccagccacctgcagaacttttcatttctgaaactgtgctgacc
gaaaaaatttcatcttttgcactgttggattttacaaaacaacagtttttcacctccggc
ctgttacaaatcaaccagcagccccagcccgtttttaataaaaattttgaaatgctggct
catgacctgaaggaaaagaaggcgctgggttatcaaacctggatttcattttcatcggaa
aagcagaaggacaggctggaaagtattctggaagaactcaatcatgacgtttccttccgc
tccttcaaaagtgaactgcatgagggctttgtcgatgctgacttaaagatttcggtatat
actgaccatcagattttcgacaggttccagcgcttcaaagcgaaaaataatttcgctaaa
tcagaacagcttaccctgaaggatatgatgtcgctgaaggtaggtgattatattgctcac
atagatcacggcataggtaagtttatgggtctagtgaagattaacaataacggaaaagtt
caggaatgttttaaactggtttacaagaatcaggatctactttatgtaagcatacattcc
ctggataagatttccaaatacaacggtcccgacggaaaggaaatagtgctttcgaaactg
ggttctccggcctggaaatccctgaagcagaaaacaaaagccaaagtaaagcagatcgcc
tttgaccttataaaactctacgcacagcgcaaaacggcaaaaggcttcagtttcacaccg
gattcctatcttcagaatgaactggaagcgagctttatttatgaggacacaccggatcag
gagaaggccaccaatgatgtaaagaaagatatggaagcgcaaaccgttatggacaggctg
gtttgcggcgatgtaggtttcgggaagacggaagtagccatacgtgcagccttcaaagcc
gctacagacggcaagcaggtggcaatgctggtacccaccactattctggcatttcagcat
ttccggagtttccaggaaaggctgaaggattttcctgttgaaatttcctatatgaaccgc
ttccggaccgccaaacaaaaagctgagacacttgctggattgaaggatggcaaactcgac
attgttatcggcacccatcaactcgtttcggataaggtaaaatttaaagacctgggactg
ctcattattgatgaggagcataaattcggcgtttcggttaaggataagcttaagacgatg
aaggccaatgtagatacactgactttaaccgcaactccaattccgcggacgcttcagttt
tccctgatggccgcgcgggacctgtcggttatcaagactccgccgcctaaccgccagccg
gtagaaacccatattgtaggttttgatgaagaactcatccgagatgctgtatcctatgag
attcagcgtgacggtcaggtgtttttcatcaacaacaggattgagaatttgaaggatatt
gccggactcatccaaaggcttgtgcccgatgcaaaggtgattacaggacacggccagatg
gaaggcaaacagctagagcaaaatgttctggattttatgaacggtaaatatgatgtgctg
gtgtccacaaccattgtggaaagtggggtagatgttcccaacgccaacactattttcatc
aatgatgcgcagcggtttggtatggcagatctgcaccagatgcgggggcgtgttgggcga
agtaaccgcaaggctttctgctatcttataacaccacccttcgatatggtaacttctgat
gcacgcaaacgactggaagccattgagcagttttcagatctgggcagcggcttccagatt
gccatgaaggatcttgaaatccggggcgcaggtgatcttttgggcgccgagcaaagtgga
ttcattaatgagatgggtttcgaaacctatcagaagattatgcaggaagcactggaggaa
ctgcagcacaatgaagaatttgaagatctttttgaaaatgaagaggaccgccgtaagctt
ataagtactgccaaagaagtaaatatagacactgacctggaactgatgctgccggacagc
tatgtacagagcaccgaagaaaggctcagtctgtatcagagactggcagatgtgaaatct
gccgcagatctggctgtatttgagaatgagttgaccgaccgtttcggagccttgcctccg
gaagcgcgcaatctgctgaaatccgttgagttgaaatggctggctgcggaggtcggtttt
gacaaactgatagtgaagaacggtgtgttcctgggttactttccggcaaatccacaggat
aaattctaccagagtgataaattccggcatatcatcacgtacctaactcagaatcctgca
gaggctactttaaaggaaaaaaacaccagcgacggtactcaattgatgatgcgcaaggag
aaggttaagaatgtggatgaggtaacagcggtattggaaagaattttaaattaa
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