Marnyiella aurantia: H1R16_11785
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Entry
H1R16_11785 CDS
T08940
Symbol
ligD
Name
(GenBank) DNA ligase D
KO
K01971
bifunctional non-homologous end joining protein LigD [EC:
6.5.1.1
]
Organism
cbau
Marnyiella aurantia
Pathway
cbau03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
cbau00001
]
09120 Genetic Information Processing
09124 Replication and repair
03450 Non-homologous end-joining
H1R16_11785 (ligD)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
cbau03400
]
H1R16_11785 (ligD)
Enzymes [BR:
cbau01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
H1R16_11785 (ligD)
DNA repair and recombination proteins [BR:
cbau03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
Two-component NHEJ DNA repair complex
H1R16_11785 (ligD)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LigD_Prim-Pol
LigD_N
DNA_ligase_A_M
DNA_ligase_A_C
mRNA_cap_enzyme
DNA_primase_S
DNA_ligase_OB_2
Motif
Other DBs
NCBI-ProteinID:
QMS98363
UniProt:
A0A7D7QF41
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All DBs
Position
2535976..2538663
Genome browser
AA seq
895 aa
AA seq
DB search
MALEEYRKKRSKEKTPEPFGGKSTARELRFVVQKHDASHLHYDFRLEMDGVLKSWAVPKG
PSMDPSVKRLAMMVEDHPFDYRNFEGAIPKGQYGGGTVIVWDEGAYLPSEPEKSRKKQEQ
QLLEQLKAGKIKFSLNGTKLKGEFALVKAHGRGDNGWLLMKLKDKYADTEDITLKDRSVL
SDKTIAEMEESPVEVYGQKKAKKTKTEAKTTSKTSKTKTAGTEKNKPAVKKREESVEKLM
SKAPKQAFYTEVAPMLATLVDKPFDSDEWLYEIKWDGYRAVAFMNEGDVTLKSRNNKSFS
EKFYPVQQELSKLKLDAVLDGEIVVLDKDGKAAFGKLQNWRSESDGELVYYVFDLLWYQG
RDLKELPLTDRRAILSQILPKSDIIMLSQEFHTSGIEFLEAARNMDLEGIMAKRKDSVYQ
TKNRTKDWLKIKANKRQEVVIGGFTINDDTKKAFSSLLVGVYDNKKLIYSGKVGTGFNTK
MQKDMMELFKPLITDKHPFTEEPDVNKPSRFRHNPPNATVTWLKPKLICEVNYTELTSDG
IMRHPSFKGMRSDKKPAQVVLEQEKPLQEVVPEAEPLVTARKDPGRKTLLNPTEKSQVKK
VNGHELKFTNLDKIFWPDEKLEKRDLINYYYRAAPFILPYLKDRPQSMNRYPDGIEGEGF
YYKDVSGSAPSWVKTFDYTSDSDKRARKYLVGTDEAALLYMANLGCIEMNPWNSTVKKPY
NPTFCILDLDPDINSFNDVIETAQVTRQLLDDLDVPSYCKTSGSTGLHIYIPLNNKYTYE
QSKEFARILVKLVQAELPELTSIERIIKKREGKIYLDFLQNRPHATIAAPYSLRPKPGAT
VSMPLHWDEVKKGLKMKDFTIFNALERMESEGDIFKPVLGKGINLKKVLKKLEGL
NT seq
2688 nt
NT seq
+upstream
nt +downstream
nt
atggcactggaagaataccgcaaaaaacgctcgaaagaaaagacacctgaacccttcggt
gggaaatcaaccgcaagggaactacggtttgtggttcagaaacacgatgcctcacatctg
cattacgacttccggctggaaatggacggagtgcttaaaagttgggcagtaccaaaagga
ccctcaatggatccgtctgttaagcgtcttgccatgatggtggaagatcacccttttgat
taccgcaattttgaaggtgctattcccaaaggacagtatggcggcggcacagttatcgtg
tgggacgagggagcttaccttccttcagaaccggaaaaaagccgtaagaaacaggagcag
caactgttggaacaactgaaagcgggaaaaattaaattctcacttaacggcactaaactg
aagggcgaatttgccttagtaaaagcgcatggccgtggcgacaacggttggctgctgatg
aaactaaaggataaatatgccgacactgaagatattacactaaaggaccgttccgtactt
tctgataaaaccatagccgaaatggaagaatccccggtggaggtgtacggtcagaagaaa
gcaaaaaaaacaaaaactgaagctaagacaacctccaaaacttcaaaaacgaaaactgcc
gggaccgaaaagaataaaccagcggtaaagaagcgggaagaatctgtggaaaaactaatg
tcaaaagcaccgaagcaggctttttatacggaagtcgcgccaatgcttgccactttggta
gataaacccttcgacagtgacgaatggctgtacgaaattaaatgggatggttaccgtgct
gtggcctttatgaatgagggtgatgtaaccctgaaatcccgtaacaataagagtttcagc
gaaaaattttatcctgttcagcaggaactctccaaacttaaactggatgctgtgctggac
ggtgaaatcgtggttctggataaagacggtaaagcagccttcggtaaactgcagaactgg
cgcagcgaatccgacggcgaactggtttactatgtcttcgacctgctttggtaccagggc
agggatctcaaagaacttccgctgaccgacaggcgcgcaattctttcacaaattttgcca
aaatcagacataattatgctgagtcaggaatttcatacctccggaattgaatttctggaa
gcagcccggaatatggacctggaaggcattatggcgaagcgtaaggacagcgtttatcaa
acaaaaaaccgaacgaaagactggctgaaaattaaagccaataaaaggcaggaggttgta
atagggggctttacaataaatgatgatacaaaaaaggcgttcagcagtttgttggtaggt
gtttacgacaataaaaaactcatatacagtgggaaggtgggcacaggattcaatacaaag
atgcagaaggacatgatggaactcttcaaaccgctgattacagataagcatccctttacg
gaagaacctgatgtaaacaaaccttcgcgcttccgccataacccgcctaacgctacggta
acctggctgaaacctaaactaatctgtgaggttaactataccgaactgacatcggacgga
attatgcgtcacccttcgtttaagggaatgcggtccgataaaaagccggcgcaggtagtt
ctggaacaggaaaaaccgctgcaggaagtggtgccagaagctgaacctctggttactgca
agaaaagatccgggccggaagacactcctgaatcctacagaaaaaagtcaggtaaaaaaa
gttaatggtcacgaactgaaattcactaacctggataaaattttctggccggacgaaaaa
ctggaaaagcgggacctcatcaattattattatcgcgccgcaccgttcattttgccgtat
ctgaaagacagaccgcaaagtatgaaccgctacccggacgggatagaaggggaaggattt
tattataaggatgtttccggcagtgccccttcctgggtcaaaacattcgattataccagc
gattccgataaacgtgcccgaaagtatcttgtagggacggatgaagcagcactgctttat
atggctaatcttggctgcatagaaatgaatccctggaattccacagtgaagaaaccttat
aatcctaccttctgcatacttgatctggacccggatataaactctttcaatgatgtaatt
gaaacagctcaggtaacgcggcaactgctggatgacctggatgttccttcatactgcaaa
accagcggttccacaggacttcatatttacattccgcttaataacaagtacacgtatgaa
cagtctaaggaatttgcacgtattcttgtaaaactggttcaggcggaacttcctgaactt
acgagtatcgaacgcataattaaaaagcgggaaggaaagatttatctcgattttctgcag
aaccgcccacacgctaccattgcagcaccctattcgctgcggccaaaacccggagccacc
gtttctatgccattgcactgggacgaagtaaagaaaggtttgaagatgaaggactttacc
atattcaatgcgctggagcgaatggaaagtgaaggcgatatcttcaaacccgtattaggc
aaaggaattaatctgaaaaaggtacttaagaaactggaagggctatag
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