KEGG   Marnyiella aurantia: H1R16_11785
Entry
H1R16_11785       CDS       T08940                                 
Symbol
ligD
Name
(GenBank) DNA ligase D
  KO
K01971  bifunctional non-homologous end joining protein LigD [EC:6.5.1.1]
Organism
cbau  Marnyiella aurantia
Pathway
cbau03450  Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:cbau00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03450 Non-homologous end-joining
    H1R16_11785 (ligD)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03400 DNA repair and recombination proteins [BR:cbau03400]
    H1R16_11785 (ligD)
Enzymes [BR:cbau01000]
 6. Ligases
  6.5  Forming phosphoric-ester bonds
   6.5.1  Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
    6.5.1.1  DNA ligase (ATP)
     H1R16_11785 (ligD)
DNA repair and recombination proteins [BR:cbau03400]
 Prokaryotic type
  DSBR (double strand breaks repair)
   NHEJ (non-homologous end-joining)
    Two-component NHEJ DNA repair complex
     H1R16_11785 (ligD)
SSDB
Motif
Pfam: LigD_Prim-Pol LigD_N DNA_ligase_A_M DNA_ligase_A_C mRNA_cap_enzyme DNA_primase_S DNA_ligase_OB_2
Other DBs
NCBI-ProteinID: QMS98363
UniProt: A0A7D7QF41
LinkDB
Position
2535976..2538663
AA seq 895 aa
MALEEYRKKRSKEKTPEPFGGKSTARELRFVVQKHDASHLHYDFRLEMDGVLKSWAVPKG
PSMDPSVKRLAMMVEDHPFDYRNFEGAIPKGQYGGGTVIVWDEGAYLPSEPEKSRKKQEQ
QLLEQLKAGKIKFSLNGTKLKGEFALVKAHGRGDNGWLLMKLKDKYADTEDITLKDRSVL
SDKTIAEMEESPVEVYGQKKAKKTKTEAKTTSKTSKTKTAGTEKNKPAVKKREESVEKLM
SKAPKQAFYTEVAPMLATLVDKPFDSDEWLYEIKWDGYRAVAFMNEGDVTLKSRNNKSFS
EKFYPVQQELSKLKLDAVLDGEIVVLDKDGKAAFGKLQNWRSESDGELVYYVFDLLWYQG
RDLKELPLTDRRAILSQILPKSDIIMLSQEFHTSGIEFLEAARNMDLEGIMAKRKDSVYQ
TKNRTKDWLKIKANKRQEVVIGGFTINDDTKKAFSSLLVGVYDNKKLIYSGKVGTGFNTK
MQKDMMELFKPLITDKHPFTEEPDVNKPSRFRHNPPNATVTWLKPKLICEVNYTELTSDG
IMRHPSFKGMRSDKKPAQVVLEQEKPLQEVVPEAEPLVTARKDPGRKTLLNPTEKSQVKK
VNGHELKFTNLDKIFWPDEKLEKRDLINYYYRAAPFILPYLKDRPQSMNRYPDGIEGEGF
YYKDVSGSAPSWVKTFDYTSDSDKRARKYLVGTDEAALLYMANLGCIEMNPWNSTVKKPY
NPTFCILDLDPDINSFNDVIETAQVTRQLLDDLDVPSYCKTSGSTGLHIYIPLNNKYTYE
QSKEFARILVKLVQAELPELTSIERIIKKREGKIYLDFLQNRPHATIAAPYSLRPKPGAT
VSMPLHWDEVKKGLKMKDFTIFNALERMESEGDIFKPVLGKGINLKKVLKKLEGL
NT seq 2688 nt   +upstreamnt  +downstreamnt
atggcactggaagaataccgcaaaaaacgctcgaaagaaaagacacctgaacccttcggt
gggaaatcaaccgcaagggaactacggtttgtggttcagaaacacgatgcctcacatctg
cattacgacttccggctggaaatggacggagtgcttaaaagttgggcagtaccaaaagga
ccctcaatggatccgtctgttaagcgtcttgccatgatggtggaagatcacccttttgat
taccgcaattttgaaggtgctattcccaaaggacagtatggcggcggcacagttatcgtg
tgggacgagggagcttaccttccttcagaaccggaaaaaagccgtaagaaacaggagcag
caactgttggaacaactgaaagcgggaaaaattaaattctcacttaacggcactaaactg
aagggcgaatttgccttagtaaaagcgcatggccgtggcgacaacggttggctgctgatg
aaactaaaggataaatatgccgacactgaagatattacactaaaggaccgttccgtactt
tctgataaaaccatagccgaaatggaagaatccccggtggaggtgtacggtcagaagaaa
gcaaaaaaaacaaaaactgaagctaagacaacctccaaaacttcaaaaacgaaaactgcc
gggaccgaaaagaataaaccagcggtaaagaagcgggaagaatctgtggaaaaactaatg
tcaaaagcaccgaagcaggctttttatacggaagtcgcgccaatgcttgccactttggta
gataaacccttcgacagtgacgaatggctgtacgaaattaaatgggatggttaccgtgct
gtggcctttatgaatgagggtgatgtaaccctgaaatcccgtaacaataagagtttcagc
gaaaaattttatcctgttcagcaggaactctccaaacttaaactggatgctgtgctggac
ggtgaaatcgtggttctggataaagacggtaaagcagccttcggtaaactgcagaactgg
cgcagcgaatccgacggcgaactggtttactatgtcttcgacctgctttggtaccagggc
agggatctcaaagaacttccgctgaccgacaggcgcgcaattctttcacaaattttgcca
aaatcagacataattatgctgagtcaggaatttcatacctccggaattgaatttctggaa
gcagcccggaatatggacctggaaggcattatggcgaagcgtaaggacagcgtttatcaa
acaaaaaaccgaacgaaagactggctgaaaattaaagccaataaaaggcaggaggttgta
atagggggctttacaataaatgatgatacaaaaaaggcgttcagcagtttgttggtaggt
gtttacgacaataaaaaactcatatacagtgggaaggtgggcacaggattcaatacaaag
atgcagaaggacatgatggaactcttcaaaccgctgattacagataagcatccctttacg
gaagaacctgatgtaaacaaaccttcgcgcttccgccataacccgcctaacgctacggta
acctggctgaaacctaaactaatctgtgaggttaactataccgaactgacatcggacgga
attatgcgtcacccttcgtttaagggaatgcggtccgataaaaagccggcgcaggtagtt
ctggaacaggaaaaaccgctgcaggaagtggtgccagaagctgaacctctggttactgca
agaaaagatccgggccggaagacactcctgaatcctacagaaaaaagtcaggtaaaaaaa
gttaatggtcacgaactgaaattcactaacctggataaaattttctggccggacgaaaaa
ctggaaaagcgggacctcatcaattattattatcgcgccgcaccgttcattttgccgtat
ctgaaagacagaccgcaaagtatgaaccgctacccggacgggatagaaggggaaggattt
tattataaggatgtttccggcagtgccccttcctgggtcaaaacattcgattataccagc
gattccgataaacgtgcccgaaagtatcttgtagggacggatgaagcagcactgctttat
atggctaatcttggctgcatagaaatgaatccctggaattccacagtgaagaaaccttat
aatcctaccttctgcatacttgatctggacccggatataaactctttcaatgatgtaatt
gaaacagctcaggtaacgcggcaactgctggatgacctggatgttccttcatactgcaaa
accagcggttccacaggacttcatatttacattccgcttaataacaagtacacgtatgaa
cagtctaaggaatttgcacgtattcttgtaaaactggttcaggcggaacttcctgaactt
acgagtatcgaacgcataattaaaaagcgggaaggaaagatttatctcgattttctgcag
aaccgcccacacgctaccattgcagcaccctattcgctgcggccaaaacccggagccacc
gtttctatgccattgcactgggacgaagtaaagaaaggtttgaagatgaaggactttacc
atattcaatgcgctggagcgaatggaaagtgaaggcgatatcttcaaacccgtattaggc
aaaggaattaatctgaaaaaggtacttaagaaactggaagggctatag

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