Clostridium botulinum B1 Okra: CLD_0944
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Entry
CLD_0944 CDS
T00671
Symbol
mfd
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
cbb
Clostridium botulinum B1 Okra
Pathway
cbb03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
cbb00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
CLD_0944 (mfd)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
cbb03400
]
CLD_0944 (mfd)
Enzymes [BR:
cbb01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
CLD_0944 (mfd)
DNA repair and recombination proteins [BR:
cbb03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
CLD_0944 (mfd)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UvrB_inter
DEAD
TRCF
CarD_TRCF_RID
Helicase_C
ResIII
RecG_dom3_C
UB2H
IstB_IS21
Motif
Other DBs
NCBI-ProteinID:
ACA45487
UniProt:
B1IGZ6
LinkDB
All DBs
Position
complement(3853517..3857023)
Genome browser
AA seq
1168 aa
AA seq
DB search
MRLEGLVSPLSLSEDFKSLLNNINLNKFPIGAYGLSDSGKNYFISNVFANVDESLVIFTH
SDVEARKIYEDLSLYTTEVYYLPTKEVVFYNIYAISGDLRWERLKVINEILSPKKKIIVT
CIESLESAYIPKELYTKYTFKLSVGDIIEIKLLEEKLIKSGYERVDIVENKGEFSVRGGI
IDIYPPISSEPYRLEFFDDEIDSIRNFNVNSQRSIEKVNNINIFPAKEIILEEENISLGL
KNIKTDLDKLVLKLNKKEDKEKIQSIINSNLEQLNESWSFENIDTFLPYFYNKTNSLLDY
IEGSLIIIDDVKRCLGKLDSTYLEFNEDYDKFLEKGCILPKQAEIVHDKERIIEQLEFKK
IINIENIKKTIDRLKPKSVLTFNQTTLQGYNGKIEFLIEDIKEKKKEKYKILILSGTRSR
GERLVNHLRDMGVESSYKDIVREIKPGEVVITFGNQGNGFQYYDIKLSVISDKDIFGQFK
KKGKKKQNKKGTGKIKSFTELKPGDFVVHANHGIGVFKGIKQLELQGNKKDYLELIYHSD
DKLYVPVEQLDMVQRYIGSEGKKPKVSKLGSSEWTKTKNKVKKSIEEIAEDLVKLYAIRA
TLKGYKYSDDTVWQKQFEEEFPYEETPDQLLAIEDIKRDMESPKPMDRLLCGDVGYGKTE
VAIRAAFKAVMDGKQVAFLVPTTILAQQHYNNFKQRFSDFPITVDVISRFRTLSEQKATI
KSIKEGNVDILIGTHRILQKDIKFKDLGLLIIDEEQRFGVKHKEKMKNLKKNVDVLTLSA
TPIPRTLHMSLVGVRDISVIETPPEERYPVQTYVVEYNDQLIRDSILREISRGGQIYFVY
NRVESIHEMASYISKLVPEGRVQIAHGQMKEKELENVVLDFTENKFDILIATTIIETGMD
IKNVNTMIIYDADKMGLSQLYQLRGRVGRTNRMAYCYLTYKRDKILTEVAEKRLKAIKDF
TELGSGFKIALKDLEIRGAGNMMGSAQHGHMASIGYDLYCRMLEDTIKLVRGDIDKEPVE
TSVELKIDAYIPNTYIKDETQKIEVYKKIASIDSKEEFMDIEEELEDRFSDIPISVYNLM
NISYIRSLGKKLDIEEIKEISNEVVFQFEDKSSLREKIVKIIMDKYSKEVAFKLNEKPAI
GYNIKNIKKEQLLPIIRNFLEHIVNNNQ
NT seq
3507 nt
NT seq
+upstream
nt +downstream
nt
atgagactagaaggtttagtatcacctttgagtttaagtgaagattttaaaagtttatta
aataatataaatttaaataaatttcctataggtgcatatggtttgtcggattctggtaaa
aattactttatcagcaatgtatttgctaatgtggatgaatctttagtgatttttactcat
agtgatgtggaagctagaaaaatatatgaagatttaagtttatatacaacggaagtatat
tatttacctactaaagaagtcgtattttataatatttatgctatatcaggagatttaaga
tgggaaagacttaaagttataaatgaaattttaagtcctaagaagaaaataatagttact
tgtatagaatctttagaatctgcatatatacctaaagaattatatacaaagtatacattt
aaattgtccgttggagatattatagaaataaagttattagaagaaaagttgataaaaagc
ggatatgaaagagtagatatagtagaaaataaaggagagttctctgtaagaggaggaata
atagatatatatcctcctatttcatcagaaccctatagactggaattttttgatgacgaa
atagattctataagaaactttaatgtgaattctcaaagaagtattgaaaaagttaataat
ataaatatatttccagctaaagaaattatacttgaagaagaaaatataagcttaggatta
aaaaatataaaaactgatttagataaattagttctgaaattaaataaaaaggaagataaa
gagaagatacaaagtataataaacagcaatttggaacagttaaatgaaagctggtctttt
gaaaatatagatactttccttccttatttttacaacaaaactaacagtttattagattat
atagaaggttctttgattattatagatgatgttaaacggtgtttaggtaagttagatagt
acttatttagagtttaatgaagattatgataaatttttagaaaagggatgcatattacct
aaacaggcggaaatcgttcatgacaaagaaagaataatagagcagttagaatttaaaaaa
ataattaacatagaaaatataaaaaaaactatagatagattaaagcctaagtctgtttta
acatttaatcaaacaaccctacaggggtataatggtaaaattgaatttttgatagaggat
ataaaagaaaagaaaaaagagaaatataaaatattaattttatcaggaactagaagtaga
ggagaaagattagtaaatcatcttagagatatgggagtagagagttcctataaagatata
gtaagagaaattaaaccaggagaagtagttataacttttgggaatcaagggaatggtttt
cagtattatgatataaaattaagtgttatatctgataaggatatatttggacaattcaaa
aagaagggcaaaaagaagcagaataaaaagggaacaggaaaaattaaaagtttcactgag
cttaaaccaggagatttcgtagtccatgctaaccatggtattggggtatttaaaggtata
aagcaattagaattacaagggaacaaaaaggattatttagaattaatatatcattcagat
gataagctttatgtaccagtagaacagttagatatggtgcaaagatatataggcagtgag
ggtaaaaaacctaaagtaagtaagctaggaagttcagaatggactaaaactaaaaataag
gttaaaaaatctatagaagaaattgcagaggatttagtaaaattatatgctataagagct
accttaaaaggctataaatattctgatgatacagtatggcaaaagcaatttgaagaagaa
tttccttatgaggaaacaccagatcaattgttagctatagaagatataaaaagggatatg
gagtcaccaaagcctatggatagacttttatgtggagacgtgggttatggtaaaactgag
gttgctataagagcggcctttaaggcagttatggatgggaagcaggtagcatttttagtt
cctactaccatattagctcaacaacattataataatttcaaacaaagattttcggatttc
cctataacagttgatgtcataagtagatttagaactttatccgagcaaaaggctactata
aaatctattaaagaaggaaatgtagatatactaataggaactcatagaattctccaaaaa
gatataaaatttaaggatttaggattattaataatagatgaggaacaaagattcggagta
aagcataaagaaaagatgaaaaatttaaagaaaaatgtagatgttttaactctaagtgcc
acccctatacctagaactttgcatatgtcattagtaggtgttagggatataagtgttata
gaaactcctccagaggaaagatatcctgttcaaacttatgtagtagagtataatgatcaa
ctgataagagattccatattaagagaaattagtagaggtggacaaatttattttgtatac
aatagagttgagagtattcatgagatggcgtcatatatatcaaaactagtaccagaagga
agagttcagatagctcatggacaaatgaaagaaaaagagctagaaaacgtagtattggac
tttacagaaaataaatttgatatattaatagccacaacaataatagaaacaggtatggat
ataaaaaatgttaacactatgattatatatgatgcagataaaatgggattatctcagcta
tatcaattaagaggaagagtaggtagaacaaatagaatggcatattgttacttaacctat
aaaagggataagatacttacagaagtagcagaaaaacgattgaaagccataaaggatttt
acggaattaggctcaggttttaagatagctttaaaggatttagaaataagaggagcaggt
aatatgatgggatctgcgcaacatgggcatatggcttctataggctatgacctttattgc
aggatgcttgaggatactataaagttagttagaggagatatagataaagagccagtagaa
acttcagtagaattaaagatagatgcttatataccaaatacttatataaaagatgaaaca
caaaagatagaagtgtataaaaagattgcatctatagattctaaagaagagtttatggat
atagaggaagaattagaagatagattttcagatatcccaatatccgtttataatttaatg
aatatatcttatataagaagcttaggtaagaagcttgatatagaagaaataaaagaaatt
tcaaatgaagttgtttttcaatttgaagacaagagtagtttaagagaaaaaattgtaaag
attataatggataagtattcaaaagaagtagcatttaaattaaatgaaaagcctgctata
ggatataatataaagaatataaaaaaagaacaattattaccaattataagaaatttttta
gaacatatagtaaacaacaatcaataa
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