Clostridium beijerinckii NCIMB 8052: Cbei_0399
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Entry
Cbei_0399 CDS
T00547
Name
(GenBank) transcription termination factor Rho
KO
K03628
transcription termination factor Rho
Organism
cbe
Clostridium beijerinckii NCIMB 8052
Pathway
cbe03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
cbe00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
Cbei_0399
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
cbe03021
]
Cbei_0399
03019 Messenger RNA biogenesis [BR:
cbe03019
]
Cbei_0399
Transcription machinery [BR:
cbe03021
]
Prokaryotic type
Bacterial type
Other transcription-related factors
Transcription termination factor
Cbei_0399
Messenger RNA biogenesis [BR:
cbe03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Other RNA degradosome components
Cbei_0399
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Rho_RNA_bind
ATP-synt_ab
Rho_N
Spore_III_AA
OB_RNB
NACHT
ATPase_2
AAA_22
AAA
AAA_25
AAA_14
Motif
Other DBs
NCBI-ProteinID:
ABR32587
UniProt:
A6LQF7
LinkDB
All DBs
Position
487168..488610
Genome browser
AA seq
480 aa
AA seq
DB search
MTKKEYESMTLTKLKDIAKDLGVKNISKYKKNELIEEILKVPSNFIEKNGVILRENIAPK
NVEETRSVMPRSNNTESNKESNDSEVKSRTNEIGNVEKKENLKEMINESNVANGILEILE
NNSFGFLRCKNYLTSSEDVYVSPSQIRRFNLRTGDEVEGKVREAKETEKFKALLFVQKVN
GEHPEKAIGRKSFETLTPIYPKERLKLETSDSNDLSSRLMDIICPIGKGQRGIIVAPPKA
GKTTLLKKIAQNISKNYPDVKLIVLLIDERPEEVTDMKRSINGDVVYSTFDEEPQNHAKV
AQMVLERAKRMVEQGKDVVILMDSITRLSRAYNLTITPTGRTLSGGLDPGALIMPKKFFG
AARKIEEGGSLTILATALIETGSRMDDMIFEEFKGTGNMEVHLDRRLQERRIFPAIDIYK
SGTRKEDLILSKEELEVAFSIRKKMYRDGNSDDITENLINMLSKTGNNKEFVDVFQKKIQ
NT seq
1443 nt
NT seq
+upstream
nt +downstream
nt
ttgacaaaaaaagaatatgaaagcatgactttaacaaagttaaaagatattgctaaagat
ttaggtgtgaaaaatatatctaaatataaaaagaatgagttaatagaagaaatattgaaa
gttcctagtaactttatagaaaagaatggtgttatattaagagaaaatatagcacctaag
aatgtagaagagactagaagtgttatgcctagaagtaataatactgagtcgaataaagaa
agcaatgattcagaagtaaaatctagaacaaatgaaattgggaatgtggaaaagaaagaa
aatttaaaagaaatgataaatgaatccaacgttgcaaatgggattttagaaatacttgaa
aataatagttttggtttcctaagatgtaaaaactatttaactagtagcgaagatgtttat
gtatctccatctcagattagaagattcaatttaagaacaggagatgaagttgagggtaaa
gtaagagaagcaaaggagactgagaagtttaaagctttattatttgttcaaaaagttaat
ggagagcatccggaaaaagctataggaagaaaatcctttgaaacattaacaccaatatat
ccaaaagaaagattaaaattagaaacctctgatagtaatgatttatcatcgagactcatg
gatataatatgcccaataggaaaaggacaaagaggaattatagttgctccaccaaaggca
gggaaaactacgctattaaaaaagattgctcaaaatatatctaaaaattatcctgatgta
aagcttattgttttgcttatagatgaaagaccagaagaagttacagatatgaagaggtct
attaatggagatgtagtttattcaacttttgatgaggaaccgcaaaaccatgcaaaggta
gcccaaatggtattagaaagggctaagagaatggttgagcaaggaaaagatgttgttatt
cttatggatagtataactagattatcaagagcatacaatttgacaataactcctacaggt
agaacattatcaggtggtcttgatccaggtgcgcttataatgcctaaaaagttttttgga
gcagcaagaaaaattgaagagggcggaagtttaacaatactagctactgcactaattgaa
acagggtcgagaatggatgatatgatatttgaagaatttaaaggaacaggtaatatggag
gttcatttagatagacgtctacaagagagaagaattttcccagctatagatatatataag
tctggaacaagaaaagaagatttaattttatctaaagaagaattagaagtagcattctcc
ataaggaaaaagatgtatagagatggaaactcagatgatattacagagaatttaattaat
atgttatctaaaactggcaacaataaagaatttgtagatgtattccagaaaaaaattcaa
tag
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