Cercospora beticola: CB0940_00339
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Entry
CB0940_00339 CDS
T09388
Name
(RefSeq) Regulator of nonsense transcripts 1
KO
K14326
regulator of nonsense transcripts 1 [EC:
5.6.2.5
5.6.2.3
]
Organism
cbet
Cercospora beticola
Pathway
cbet03013
Nucleocytoplasmic transport
cbet03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
cbet00001
]
09120 Genetic Information Processing
09122 Translation
03013 Nucleocytoplasmic transport
CB0940_00339
03015 mRNA surveillance pathway
CB0940_00339
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
cbet03019
]
CB0940_00339
Enzymes [BR:
cbet01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.3 DNA 5'-3' helicase
CB0940_00339
5.6.2.5 RNA 5'-3' helicase
CB0940_00339
Messenger RNA biogenesis [BR:
cbet03019
]
Eukaryotic type
mRNA surveillance and transport factors
Surveillance factors
Surveillance complex
CB0940_00339
mRNA cycle factors
Common to processing body (P body) and stress granule
CB0940_00339
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UPF1_Zn_bind
AAA_12
AAA_11
UPF1_1B_dom
AAA_30
AAA_19
ResIII
DEAD
Viral_helicase1
UvrD-helicase
SLFN-g3_helicase
PIF1
Helicase_RecD
nSTAND3
AAA_22
ATPase
AAA_16
AAA_10
PhoH
SRP54
Motif
Other DBs
NCBI-GeneID:
35424152
NCBI-ProteinID:
XP_023460096
LinkDB
All DBs
Position
1:complement(899170..904101)
Genome browser
AA seq
1078 aa
AA seq
DB search
MEGTFTNVANHLVGDSASAINEGDDTSTLDAALNGGPRRRRVGDDDDADVYEDDDLESLA
SHANGVNGQAGPGQEEQVELPAHACAYCGIHNPSSVVKCLTCSKWFCSARGNTSSSHIIN
HLVRARHKEVQLHPSSPLGDTTLECYNCGTKNVFLLGFIPAKSDTVVVLLCRQPCAAQPS
SKDMNWDTAKWQPLIEDRSFLSWLVNSPTDQEQMRARHLPPQVIAKLEELWKDNSSATIE
DLEKSAGIDDEPAPVLLRYDDAYQYQNVFGPLVKIEADYDRKLKEAQSQDNLVVRWDFGL
NNKHLASFVLPKLELGDVKLAVGDEMRLRYTGELRPHWEGVGYVIKIPNNQSDEVTIELR
SRGDHKSVPTECTHNFTADYVWKATSFDRMQHAMKTFAIDEMSVSGYIFHRLLGHEVAAA
PMKVQMPKKFSVPNLPDLNSSQIQAVKSVLQKPLSLIQGPPGTGKTVTSATIIYHLSKMN
GGQVLVCAPSNVAVDQLCERIHLTGLKVVRVTAKSREDVESNVGFLSLHRQVAMNDTNVE
LNKLNQLKSELGELSSQDEKKFKTLTRAAEREILQNADVICCTCVGAGDPRLAKFKFRTV
LIDESTQSAEPECMIPLVLGCKQVVLVGDHQQLGPVIMNKKAAKAGLNQSLFERLVILGL
SPIRLQVQYRMHPCLSEFPSNMFYEGSLQNGITMQQRLRKDVEFPWPVADSPMMFWSNLG
TEEISASGTSYLNRTEASNVEKIVTRFFKAGVKPDAIGIITPYEGQRSYVVQSMQQTGTF
KKELYKEIEVASVDAFQGREKDFIVLSCVRSNDHQGIGFLSDPRRLNVALTRAKYGLVIL
GNPKVLSKHPLWHYLLLHFKERNCLVEGPLNNLQVSLLQFSRPKTSYRGPQRYQMAYQHA
NHMAAATGARVNGRRDGPQGDGSIVGYIPDDVSSIHSSALGGAALPNQFPTMFQGFQESW
PTLPADQRRHMGHGNHMRAPPESVAGESVAASEITDVTTNGSLKPGQGGVSLAGLSINDL
NKQASLSQSDKLRRYVEGQGPPQPPIGAGRNRAALEDDAQSSVSTAFASQVGGGGGYD
NT seq
3237 nt
NT seq
+upstream
nt +downstream
nt
atggaaggcacattcaccaatgtcgccaatcatctcgtaggtgactcggcttccgccatc
aacgaaggcgatgacacttccacactggatgctgccctgaacggcggcccccggagaaga
cgagtgggcgacgatgacgatgcagacgtatacgaggacgacgatcttgagtcgctggcc
agccatgccaacggcgtgaacggtcaagctgggcctggccaagaggagcaagtggagctg
cctgctcacgcctgcgcctactgtggcattcacaacccgagctcagttgtcaagtgtctg
acctgctccaagtggttctgttctgcgcgaggcaatacctccagcagccatatcatcaat
cacttggttcgagcgaggcacaaggaggttcagctgcacccgtcttctccactgggtgac
accacacttgagtgctacaactgcggtacgaaaaatgtatttctgctgggttttattccg
gcgaagagcgacaccgtcgtcgttttgctctgccgccagccatgtgccgcacagcccagc
agcaaggacatgaactgggacaccgcgaagtggcaaccgttgatcgaagatcgatctttc
ctttcgtggctcgtcaattctcccaccgatcaggaacagatgcgtgctcgtcacctgcca
cctcaggtcattgctaaacttgaggagctgtggaaggataacagcagtgcaacgattgag
gatttggaaaagagcgcgggcatcgatgatgagccagcaccggttctgctgcgatacgac
gatgcctaccaatatcaaaatgtcttcggcccgctggtcaagatcgaagcagactatgat
cgcaagctgaaggaagctcagagccaggacaacttggtcgtgcgctgggattttggtttg
aacaacaagcatcttgcttcatttgttcttccgaagctcgagctcggagatgtcaagctt
gcggtaggagatgagatgcgacttcgatacaccggcgagctacgtccgcactgggagggc
gtgggctatgtcatcaagatccccaacaaccagtctgacgaagtgacgattgagctgagg
tcgcgtggcgatcacaaatcagtgcccaccgagtgcacacacaacttcactgccgattac
gtttggaaagcaacttcgttcgatcgcatgcaacacgccatgaagacttttgcgattgac
gagatgtcagtgtcaggatacatctttcaccgcttgctcggacacgaagttgctgcagcg
ccgatgaaggtccagatgcctaagaagttcagcgtccccaatctgcctgatctcaacagt
tcgcaaatccaagcagtcaaatcggtactgcagaagccactcagcctgattcaaggtcct
ccaggtaccggaaagacagtcacttcagcaactatcatttaccatctgtccaagatgaac
ggtggacaagtcctcgtctgtgcaccatccaacgttgccgtggaccagctttgcgagcgc
atacacttgactggcttgaaggtcgttcgtgtaactgcgaagtcccgcgaggatgttgag
tccaatgttggcttcttgtctcttcaccgccaggtcgccatgaacgataccaatgttgaa
ctcaacaagctcaatcaactcaagtcggagcttggtgaattgtccagccaagatgagaag
aagttcaagacgctcacccgtgctgctgagcgcgagattctccaaaacgccgacgtcatc
tgctgtacttgcgtgggtgctggagatccacgtctggcaaagttcaagttcagaactgtt
ctgatcgatgagagcacacagtctgctgaacccgagtgcatgattccattggttcttgga
tgcaagcaggtggtgctcgttggtgaccaccaacagctgggcccggtcatcatgaacaag
aaggccgccaaggctggtctgaaccagtcactcttcgagcgtctggtcattctcggcttg
tcgccaattcgcctccaagtgcagtaccgtatgcatccttgtctttctgaattcccatcc
aacatgttctacgaaggctctctgcagaatggtattaccatgcaacagcgcctccgcaag
gacgtagagttcccctggccagtggcggactcaccaatgatgttctggtcgaacctgggt
actgaggaaatcagtgcatcaggaacgtcctacctgaatcgcaccgaggcttccaatgtc
gagaagatcgtcacacgcttcttcaaggctggagtcaagccagatgcgatcggtatcatc
accccatacgaaggccagcgctcctacgttgttcaaagcatgcagcagacaggcactttc
aagaaggagctctataaggagatcgaagttgcctccgtcgatgcattccagggacgagaa
aaggactttattgttctttcttgcgttcgtagcaatgatcaccagggcattggtttcttg
agcgaccctcgacgtctgaacgttgctctgactcgagccaagtatggactcgtcattctt
ggcaaccccaaggtcctgagcaagcatccgctgtggcactacctcttgcttcacttcaag
gagcggaactgcttggtggaaggcccgctcaacaacctccaagtctcactgttgcagttc
agccgaccgaagacttcctacaggggtccacaacgctaccagatggcttatcagcatgcc
aaccacatggccgctgctaccggagctcgtgtgaatggtcgtcgtgacgggcctcagggc
gatggcagcatcgtcggttatatccctgatgatgtctcttccatccactcctcggcacta
ggaggcgcggctctgcccaatcagttcccaaccatgttccaaggtttccaggagtcatgg
cctactctccctgctgaccagcgccgtcacatgggccacggcaatcacatgcgcgctcca
ccggagtccgttgctggcgagagtgtcgccgcaagtgagattactgatgtcaccacgaac
ggctctctcaagccaggtcaaggtggcgtgagccttgcaggcttgagcattaacgacctg
aacaagcaagcttcgctgtctcagtctgacaagctccgtcgctacgtggaaggccaggga
ccaccacagcccccgataggagctggcagaaaccgagcggctttggaggacgacgcgcag
agcagcgtcagcaccgcattcgctagccaagtcggtggtggcggaggctacgactga
DBGET
integrated database retrieval system
