Clostridium botulinum F Langeland: CLI_3759
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Entry
CLI_3759 CDS
T00563
Symbol
mfd
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
cbf
Clostridium botulinum F Langeland
Pathway
cbf03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
cbf00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
CLI_3759 (mfd)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
cbf03400
]
CLI_3759 (mfd)
Enzymes [BR:
cbf01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
CLI_3759 (mfd)
DNA repair and recombination proteins [BR:
cbf03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
CLI_3759 (mfd)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UvrB_inter
DEAD
TRCF
CarD_TRCF_RID
Helicase_C
ResIII
RecG_dom3_C
UB2H
IstB_IS21
Motif
Other DBs
NCBI-ProteinID:
ABS41604
UniProt:
A7GJD3
LinkDB
All DBs
Position
complement(3885170..3888676)
Genome browser
AA seq
1168 aa
AA seq
DB search
MRLEGLVSPLSLSKDFKSLLNNINLNRFPIGAYGLSDSGKNYFISNIFANVDESLVIFTH
SDVEARKIYEDLSLYTTEVYYLPTKEVVFYNIYAISGDLRWERLKVINEILSPKKKIIVT
CIESLESAYIPKELYTKYTFKLSVGDIIEIKLLEEKLIKSGYERVDIVENKGEFSVRGGI
IDIYPPISSEPYRLEFFDDEIDSIRNFNVNSQRSIEKVNNINIFPAKEIILEEENISLGL
KNIKTDLDKLVLRLNKKEDKEKIQSIINSNLEQLNESWSFENIDTFLPYFYNKTNSLLDY
IEGSLIIIDDVKRCLGKLDSTYLEFNEDYDKFLQKGCILPKQAEIVHDKERIIEQLEFKK
IINIENIKKTIDRLKPKSVLTFNQTTLQGYNGKIEFLIEDIKEKKKEKYKILILSGTRSR
GERLVNHLRDMGVESSYKDIVREIKPGEVVITFGNQGNGFQYYDIKLSVISDKDIFGQFK
KKGKKKQNKKGTGKIKSFTELKPGDFVVHANHGIGVFKGIKQLELQGNKKDYLELIYHSD
DKLYVPVEQLDMVQRYIGSEGKKPKVSKLGSSEWTKTKNKVKKSIEEIAEDLVKLYAIRA
TLKGYKYSDDTVWQKQFEEEFPYEETPDQLLAIEDIKRDMESPKPMDRLLCGDVGYGKTE
VAIRAAFKAVMDGKQVAFLVPTTILAQQHYNNFKQRFSDFPITVDVISRFRTLSEQKATI
KSIKEGNVDILIGTHRILQKDIKFKDLGLLIIDEEQRFGVKHKEKMKNLKKNVDVLTLSA
TPIPRTLHMSLVGVRDISVIETPPEERYPVQTYVVEYNDQLIRDSILREISRGGQIYFVY
NRVESIHEMASYISKLVPEGRVQIAHGQMKEKELEHVVLDFTENKFDILIATTIIETGMD
IKNVNTMIIYDADKMGLSQLYQLRGRVGRTNRMAYCYLTYKRDKILTEVAEKRLKAIKDF
TELGSGFKIALKDLEIRGAGNMMGSAQHGHMASIGYDLYCRMLEDTIKLVRGDIDKEPVE
TSVELKIDAYIPNTYIKDETQKIEVYKKIASIDSKEEFMDIEEELEDRFSDIPISVYNLM
NISYIRSLGKKVDIEEIKEISNEVVFQFEDKSSLREKIVKIIMDKYSKEVAFKLNEKPAI
GYNIKNIKKEQLLPIIRNFLEHIVNNNQ
NT seq
3507 nt
NT seq
+upstream
nt +downstream
nt
atgagactagaaggtttagtatcacctttgagtttaagtaaagattttaaaagtttatta
aataatataaatttaaatagatttcctataggtgcatatggtttgtcggattctggtaaa
aattactttatcagcaatatatttgctaatgtggatgaatctttagtgatttttactcat
agtgatgtggaagctagaaaaatatatgaagatttaagtttatatacaacggaagtatat
tatttacctactaaagaagtcgtattttataatatttatgctatatcaggagatttaaga
tgggaaagacttaaagttataaatgaaattttaagtcctaagaagaaaataatagttact
tgtatagaatctttagaatctgcatatatacctaaagaattatatacaaagtatacattt
aaattgtctgttggagatattatagaaataaagttattagaagaaaagttgataaaaagc
ggatatgaaagagtagatatagtagaaaataaaggagagttctctgtaagaggaggaata
atagatatatatcctcctatttcatcagaaccctatagactggaattttttgatgacgaa
atagattctataagaaactttaatgtgaattctcaaagaagtattgaaaaagttaataat
ataaatatatttccagctaaagaaattatacttgaagaagaaaatataagcttaggatta
aaaaatataaaaactgatttagataaattggttctgagattaaataaaaaggaagataaa
gagaaaatacaaagtataataaacagcaatttggaacagttaaatgaaagctggtctttt
gaaaatatagatacttttcttccttatttttacaacaaaactaacagtttattagattat
atagaaggttctttaattattatagatgatgttaaacggtgcttaggtaagttagatagt
acttatttagagtttaatgaagattatgataaatttttacaaaagggatgcatattacct
aaacaggcggaaattgttcatgacaaagaaagaataatagagcagttagaatttaaaaaa
ataattaacatagaaaatataaaaaaaactatagatagattaaagcccaagtctgtttta
acatttaatcaaacaaccctacaggggtataatggtaaaattgaatttttgatagaggat
ataaaagaaaagaaaaaagagaaatataaaatattaattttatcaggaactagaagtaga
ggagaaagattagtaaatcatcttagagatatgggagtagagagttcctataaagatata
gtaagagaaattaaaccaggagaagtagttataacttttgggaatcaagggaatggtttt
cagtattatgatataaaattaagtgttatatctgataaggatatatttggacaattcaaa
aagaagggcaaaaagaagcagaataaaaagggaacaggaaaaattaaaagtttcactgag
cttaaaccgggagatttcgtagtccatgctaaccatggtattggggtatttaaaggtata
aagcaattagaattacaagggaacaaaaaggattatttagaattaatatatcattcagat
gataagctttatgtaccagtagaacagttagatatggtgcaaagatatataggcagtgag
ggtaaaaaacctaaagtaagtaagctaggaagttcagaatggactaaaactaaaaataag
gttaaaaaatctatagaagaaattgcagaggatttagtaaaattatatgctataagagct
accctaaaaggctataaatattctgatgatacagtatggcaaaagcaatttgaagaagaa
tttccttatgaggaaacaccagatcaattgttagctatagaagatataaaaagggatatg
gagtcaccaaagcctatggatagacttttatgtggagacgtaggttatggtaaaactgag
gttgctataagagcggcctttaaggcagttatggatgggaagcaggtagcatttctagtt
cctactaccatattagctcaacaacattataataattttaaacaaagattttcggatttc
cctataacagttgatgtcataagtagatttagaactttatccgaacaaaaggctactata
aaatctattaaagaaggaaatgtagatatactaataggaactcatagaattctccaaaaa
gatataaaatttaaggatttaggattattaataatagatgaggaacaaagattcggagta
aagcataaagaaaagatgaaaaatttaaagaaaaatgtagatgttttaactctaagtgcc
acccctatacctagaactttgcatatgtcattagtaggtgttagggatataagtgttata
gaaactcctccagaggaaagatatcctgttcaaacttatgtagtagagtataatgatcaa
ctgataagagattccatattaagagaaattagtagaggtggacaaatttattttgtatac
aatagagttgagagtattcatgagatggcgtcatatatatcaaaactagtaccagaagga
agagttcagatagctcatggacaaatgaaagaaaaagagctagaacacgtagtattggac
tttacagaaaataaatttgatatattaatagccacaacaataatagaaacaggtatggat
ataaaaaatgttaacactatgattatatatgacgcagataaaatgggactatctcagcta
tatcaattaagaggaagagtaggtagaacaaatagaatggcatattgttacttaacctat
aaaagggataagatacttacagaagtagcagaaaaacgattgaaagccataaaggatttt
acggaattaggctcaggttttaagatagctttaaaggatttagaaataaggggagcaggt
aatatgatgggatctgcgcaacatggccatatggcttctataggctatgacctttattgc
aggatgctcgaggatactataaagttagttagaggtgatatagataaagagccagtagaa
acttcagtagaattaaagatagatgcttatataccaaatacttatataaaagatgaaaca
caaaagatagaagtgtataaaaagattgcatctatagattctaaagaagagtttatggat
atagaagaggaattagaagatagattttcagatatcccaatatccgtttataatttaatg
aatatatcttatataagaagcttaggtaagaaggttgatatagaagaaataaaagaaatt
tcaaatgaagttgtttttcaatttgaagacaagagtagtttaagagaaaaaattgtaaag
attataatggataagtattcaaaagaagtagcatttaaattaaatgaaaagcctgctata
ggatataatataaagaatataaaaaaagaacaattattaccaattataagaaatttttta
gaacatatagtaaacaacaatcaataa
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