Clostridium botulinum Ba4: CLJ_B3869
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Entry
CLJ_B3869 CDS
T00895
Symbol
mfd
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
cbi
Clostridium botulinum Ba4
Pathway
cbi03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
cbi00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
CLJ_B3869 (mfd)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
cbi03400
]
CLJ_B3869 (mfd)
Enzymes [BR:
cbi01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
CLJ_B3869 (mfd)
DNA repair and recombination proteins [BR:
cbi03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
CLJ_B3869 (mfd)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
UvrB_inter
TRCF
CarD_TRCF_RID
Helicase_C
ResIII
UB2H
RecG_dom3_C
IstB_IS21
Motif
Other DBs
NCBI-ProteinID:
ACQ54332
UniProt:
A0A3F3A721
LinkDB
All DBs
Position
complement(3873076..3876582)
Genome browser
AA seq
1168 aa
AA seq
DB search
MRLEGLVSPLSLSEDFKSLLNNINLNKFPIGAYGLSDSGKNYFISNIFANVDESLVIFTH
SDVEARKIYEDLSLYTTEVYYLPTKEVVFYNIYAISGDLRWERLKVINEILSPKKKIIVT
CIESLESAYIPKELYTKYTFKLSVGDIIEIKLLEEKLIKSGYERVDIVENKGEFSVRGGI
IDIYPPISSEPYRLEFFDDEIDSIRNFNVNSQRSIEKANNINIFPAKEIILEEENISLGL
KNIKTDLDKLVLKLNKKEDKEKIQSIINSNLEQLNESWSFENIDTFLPYFYNKTNSLLDY
IEGSLIIIDDVKRCLGKLESTYLEFNEDYNKFLEKGCILPKQAEIVHDKERMIEQLEFKK
IINIENIKKTIDRLKPKSVLTFNQTTLQGYNGKIEFLIEDIKEKKKEKYKILILSGTRSR
GERLVNHLRDMGVESSYKDIVREIKPGEVVITFGNQGNGFQYYDIKLSVISDKDIFGQFK
KKGKKKQNKKGTGKIKSFTELKPGDFVVHANHGIGVFKGIKQLELQGNKKDYLELIYHSD
DKLYVPVEQLDMVQRYIGSEGKKPKVNKLGSSEWTKTKNKVKKSIEEIAEDLVKLYAIRA
TLKGYKYSDDTVWQKQFEEEFPYEETPDQLLAIEDIKRDMESPKPMDRLLCGDVGYGKTE
VAIRAAFKAVMDGKQVAFLVPTTILAQQHYNNFKQRFSDFPITVDVISRFRTLSEQKATI
KSIKEGNVDILIGTHRILQKDIKFKDLGLLIIDEEQRFGVKHKEKMKNLKKNVDVLTLSA
TPIPRTLHMSLVGVRDISVIETPPEERYPVQTYVVEYNDQLIRDSILREISRGGQIYFVY
NRVESIHEMASYISKLVPEGRVQIAHGQMKEKELENVVLDFTENKFDILIATTIIETGMD
IKNVNTMIIYDADKMGLSQLYQLRGRVGRTNRMAYCYLTYKRDKILTEVAEKRLKAIKDF
TELGSGFKIALKDLEIRGAGNMMGSAQHGHMASIGYDLYCRMLEDTIKLVRGDIDKEPVE
TSVELKIDAYIPNTYIKDETQKIEVYKKIASIDSKEEFMDVEEELEDRFSDIPISVYNLM
NISYIRSLGKKLDIEEIKEISNEVVFQFEDKSSLKEKIVKLIMDKYSKEVAFKLNEKPAI
GYSIKNIKKEQVLSVIKDFLEYIVGNNE
NT seq
3507 nt
NT seq
+upstream
nt +downstream
nt
atgagactagaaggtttagtatcacctttgagtttaagtgaagattttaaaagtttatta
aataatataaatttaaataaatttcctataggtgcatatggtttgtcggattctggtaaa
aattactttatcagcaatatatttgctaatgtggatgaatctttagtgatttttactcat
agtgatgtggaagctagaaaaatatatgaagatttaagtttatatacaacggaagtatat
tatttacctactaaagaagtcgtattttataatatttatgctatatcaggagatttaaga
tgggaaagacttaaagttataaatgaaattttaagtcctaagaagaaaataatagttact
tgtatagaatctttagaatctgcatatatacctaaagagttatatacaaagtatacattt
aaattatctgttggagatattatagaaataaagttattagaagaaaagttgataaaaagc
ggatatgaaagagtagatatagtagaaaataaaggagagttctctgtaagaggaggaata
atagatatatatcctcctatttcatcagaaccctatagactggaattttttgatgacgaa
atagattctataagaaactttaatgtgaattctcaaaggagtattgaaaaagctaataat
ataaatatatttccagctaaagaaattatacttgaagaagaaaatataagcttaggatta
aaaaatataaaaactgatttagataaattggttctgaaactaaataaaaaggaagataaa
gagaagatacaaagtataataaacagcaatttggaacagttaaatgaaagctggtctttt
gaaaatatagacacttttcttccttatttttacaataaaactaacagtttattagattat
atagaaggttctttgattattatagatgatgttaaacgatgcttaggtaagttagaaagt
acttatttagagtttaatgaagactataataaatttttagaaaagggatgcatattacct
aaacaggcggaaattgttcatgacaaagaaagaatgatagagcagttagaatttaaaaaa
ataattaacatagaaaatataaaaaaaactatagatagattaaagcccaagtctgtttta
acatttaatcaaacaaccctacaggggtataatggtaaaattgaatttttgatagaggat
ataaaagaaaagaaaaaagagaaatataaaatattaattttatcaggaactagaagtaga
ggggaaagattagtaaatcatcttagagatatgggagtagagagttcctataaagatata
gtaagagaaattaaaccaggagaagtggttataacttttgggaatcaagggaatggtttt
cagtattatgatataaaattaagtgttatatctgataaggatatatttggacaattcaaa
aagaagggaaaaaagaagcagaataaaaaaggaacaggaaaaattaaaagtttcactgag
cttaaaccgggagatttcgtagtccatgctaaccatggtattggggtatttaaaggtata
aagcaattagaattacaagggaataaaaaggattatttagaattaatatatcattcagat
gataagctttatgtaccagtagaacagttagatatggtgcaaagatatataggcagtgag
ggtaaaaaacctaaagtaaataagctaggaagctcagagtggactaaaactaaaaataag
gttaaaaaatccatagaagaaattgcagaggatttagtaaaattatatgctataagagct
accctaaaaggctataaatattctgatgatacagtatggcaaaagcaatttgaagaagaa
tttccttatgaggaaacaccagatcaattgttagctatagaagatataaaaagagatatg
gagtcaccaaagcctatggatagacttttatgtggagacgtgggttatggtaaaactgag
gttgctataagagcggcctttaaggcagttatggatgggaagcaggtagcatttttagtt
cctactaccatattagctcaacaacattataataatttcaaacaaagattttcggatttt
cctataacagttgatgtcataagtagatttagaactttatcagagcaaaaggccactata
aagtctattaaagaaggaaatgtagatatactaataggaactcatagaattctccaaaaa
gatataaaatttaaggatttaggattattaataatagatgaggaacaaagatttggagta
aagcataaagaaaaaatgaaaaatttaaagaaaaatgtagatgttttaactttaagtgct
acccctatacctaggactttgcatatgtcattagtaggtgttagggatataagtgttata
gaaactcctccagaggaaagatatcctgttcaaacttatgtagtagagtataatgatcaa
ctgataagagattccatattaagagaaattagtagaggtggacaaatttattttgtatac
aatagagttgagagtattcatgagatggcgtcatatatatcaaaactggtaccagaagga
agagttcagatagctcatggacaaatgaaagaaaaagagctagaaaacgtagtattggac
tttacagaaaataaatttgatatattaatagccacaacaataatagaaacaggtatggat
ataaaaaatgttaacactatgattatatatgacgcagataaaatgggattatctcagcta
tatcaattaagaggaagagtaggtagaacaaatagaatggcatattgttacttaacctat
aaaagggataagatacttacagaagtagcagaaaaacgattgaaagccataaaggatttt
acggaattaggctcaggttttaagatagctttaaaggatttagaaataagaggagcaggc
aatatgatgggatctgcgcaacatggacatatggcttctataggctatgatctttattgc
aggatgcttgaggatactataaagttagttagaggtgatatagataaagagccagtagaa
acttcagtagaattaaagatagatgcttatataccaaatacttatataaaagatgaaaca
caaaagatagaagtgtataaaaagattgcatctatagattctaaagaagagtttatggat
gtagaagaggaattagaagatagattttcagatatcccaatatccgtttataatttaatg
aatatatcttatataagaagcttaggcaagaagcttgatatagaagaaataaaagaaatt
tcaaatgaagttgtttttcaatttgaagacaagagtagtctaaaagaaaaaattgtaaag
cttataatggataagtattcaaaagaagtagcatttaaattaaatgaaaagcctgctata
ggatatagtataaagaatataaagaaagaacaggtcctttcagttataaaagatttttta
gaatatatagtaggaaacaatgaataa
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