Clostridium botulinum B Eklund 17B (NRP): CLL_A0152
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Entry
CLL_A0152 CDS
T00696
Symbol
mfd
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
cbk
Clostridium botulinum B Eklund 17B (NRP)
Pathway
cbk03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
cbk00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
CLL_A0152 (mfd)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
cbk03400
]
CLL_A0152 (mfd)
Enzymes [BR:
cbk01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
CLL_A0152 (mfd)
DNA repair and recombination proteins [BR:
cbk03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
CLL_A0152 (mfd)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UvrB_inter
DEAD
TRCF
CarD_TRCF_RID
Helicase_C
ResIII
RecG_dom3_C
UB2H
DUF2141
Motif
Other DBs
NCBI-ProteinID:
ACD22167
UniProt:
B2TI11
LinkDB
All DBs
Position
168912..172415
Genome browser
AA seq
1167 aa
AA seq
DB search
MRLKGLLEPLETGIELQKILKSINEKTYPVGIYGLSDSGRSYMIDGIFENIEKSIVIVTQ
SDMEAKNLYEDLILYTNEVYYFPVKETVFYNIDAISGDLRWARLNVINEILNNKNKKIVI
TSVDCFMATYAPHKLFVKYSMTIKQGAEINFNEMSSKLIESGYERVEIVESKGQFSIRGG
ILDIFPTCSTYPYRVELFGDEVESIRTFNSESQRSIDKVKSFKVFPAKEIIVSQESMTKA
KESILNEFKEISLDNKEKERIEKLEKVVKSNIESLEENLTFETIDSYLPYFYEEVESFFD
YFKNYLFIMNDVKRCKGKLESSYLEFAENFTSFLERGDILPGQEKLLIKEHDTLDKFEES
NILFFETLNNTEKFLRPFTNIELKQTTLSNYQGQLDILIEDILDKKSKGYKTVILSGTKV
RGERLVDTLRDRGVESSYKDNIEEIQFGEVIITCGNQLKGFEYPEYKVCVISDKEVFGEA
KRKLKQKSKKKKGISKIKSFNELKPGDYVVHVNHGIGVYKGIKQIDVSGHKRDYLDIVYD
KGDKLYVPVEQLDLIQKYIGSEGKSPKVTKLGGAEWQKAKAKVRKSINDIAEDLVKLYAT
RSTIKGHKFSKDTQWQRQFEDEFPFEETPDQLTSLEEIKKDMESDKVMDRLLCGDVGYGK
TEVALRAAFKAVMDGKQVALLVPTTILAEQHYKNMKKRFSDFPIKIDMVSRFRTAKEQKV
TIQRLKEGNVDILVGTHKLVSKDIQFKDLGLLIVDEEQRFGVSQKEKIKNIKKNVDVLTL
SATPIPRTLHMSLTGARDISVIETPPEERYPVQTYVVEQNDQLIRDAILREIGRGGQVYF
VYNRVEDINEMARYVQELVPESKVSVTHGQMTERQLEKEMISFMDQESNVLVCTTIIETG
IDIPNVNTIIVYNSDKMGLSQLYQLRGRVGRSNRIAYAYLLYTKDKVLTEVAEKRLKALK
DFTELGSGFKIAMRDLEIRGAGNIMGSSQHGHMASVGYDLYCRMLEDTIKLIKGDISKEP
IETTVEIKIDAFISENYIEDEIQKIEIYKKIAAIEDIEDYNDIKEELEDRYSKIPEPVHN
LMDIAYIKSIAKKLFIEEIKEMPKEIRFRFASGEDEYKKLFKILMENYKENIILKFGTEP
YFSFKTQDMKKEDKLEFLKEILEKLES
NT seq
3504 nt
NT seq
+upstream
nt +downstream
nt
atgagattaaaagggttattagagcccttagaaactggtattgagttacaaaaaatatta
aaatctattaatgaaaaaacttatccagtaggtatatatgggttatcagattcaggaaga
tcttatatgatagatggaatatttgaaaatattgaaaaatctattgttattgttactcaa
agtgatatggaagctaagaatctttatgaagacctaattttatatactaatgaagtatat
tattttccagtaaaagaaacggttttttataatatagatgctatatcaggtgatttaaga
tgggcaagattaaatgtaataaatgagatattaaataataaaaataaaaagatagtaata
acgtctgtagattgttttatggcaacttatgctccgcataaattatttgttaaatatagt
atgactataaaacaaggtgctgagattaattttaatgaaatgtcttcaaaattaattgaa
agtgggtatgaaagagtagaaatagttgaatcaaagggtcaattttctataagaggagga
atattagatatattcccaacatgttcaacttatccttatagagttgaactttttggagat
gaggtagaatctattagaacttttaattctgaatctcaaagaagtatagataaagttaaa
tcttttaaagtgtttcctgcaaaagagataatagtatctcaagaatcaatgactaaagca
aaagaatcaattttaaatgaatttaaggaaatttctttagataataaggaaaaagaaaga
atagagaaattagaaaaagtagttaaatctaatatagagtcactcgaagaaaatttaaca
tttgaaactatagatagttatttaccttatttttatgaagaagtagaaagtttttttgat
tattttaaaaattatttatttataatgaatgatgttaaacgatgtaaaggtaaactagaa
tcatcttatttagagtttgccgaaaacttcacttcatttcttgaaagaggagatatactt
ccaggtcaagaaaagttattaattaaagaacatgatacattagataaatttgaggaatca
aatatacttttctttgaaactttaaataatacagaaaaatttttaagacctttcacaaat
atagagttaaagcaaacaacgttaagcaattatcaaggtcaattagatatactaatagaa
gacatcttagacaaaaaatcaaagggatataaaacagtaatattatctggtactaaagtc
agaggagaaagacttgtagacaccttaagagatagaggggttgaaagttcttataaagac
aatatagaggaaatacaatttggagaagttataataacttgtggtaaccaattaaaggga
tttgaatatccagaatacaaagtgtgtgttatatcagataaagaagtatttggtgaagca
aagagaaagctaaagcaaaagagtaaaaagaaaaagggtatatctaaaataaaaagcttt
aatgaattgaagccaggagattatgtagttcatgtaaatcatggaataggagtttataag
ggaatcaaacagatagatgtatctggtcataagagagattatctagatattgtatatgac
aaaggtgataaactatatgttccagtagaacaacttgatttaattcaaaaatacattggt
agtgagggtaaatctcctaaagttacgaaacttggtggagctgaatggcaaaaggctaag
gcaaaagttagaaaatcgattaatgatattgcagaagatttagtgaagttatatgctact
agatctacaataaaaggtcataaatttagtaaagatactcaatggcaaagacaatttgaa
gatgaatttccatttgaagaaacaccagatcaattaacttcactagaagaaataaagaaa
gatatggaatctgataaagttatggatagattgctttgtggtgatgttggatatggaaaa
acggaagtagcattaagagctgcttttaaagctgttatggatgggaaacaagtagcacta
ttagttcctacaactatcttggctgaacaacattacaaaaatatgaaaaaaagattctct
gatttcccaataaaaatagatatggtaagtagatttaggacagctaaagaacaaaaggtt
acaatacaaagattaaaagagggaaatgtagatattttagttggtactcataaattagta
tcaaaggatatacaatttaaggatttaggattgcttatagtagatgaagaacaaagattt
ggagtatctcaaaaggaaaaaatcaaaaatataaagaaaaatgtagatgttttaacatta
agtgcgacacctattcctagaacacttcatatgtcattaactggtgctagagatatatcg
gtaatagaaactccaccagaagaaagatatcctgttcaaacatatgttgtagagcaaaat
gaccaacttataagagatgcaatattaagagaaattggtaggggtggtcaagtctatttt
gtttataatagagtagaagatataaatgaaatggctagatatgtccaagaattagtgccg
gagagcaaggtttcggttacacatggacaaatgacagaaagacaattagaaaaagaaatg
atttcatttatggatcaagaatccaatgttttagtttgtactacaataatagaaactgga
atagatatccctaatgtaaatacaataatagtttataattctgataagatgggattatct
caactttatcaattaaggggaagagttggtagatcgaatagaattgcatatgcatattta
ttatatactaaggataaagtattaactgaagttgcagaaaagagacttaaagcattaaaa
gattttactgaattaggttcaggatttaaaatagccatgagagacttagaaataagaggt
gctggaaacattatgggttcatctcaacatggtcatatggcatctgtaggttacgattta
tattgtagaatgcttgaagatactattaagttaattaaaggtgatatatctaaagaacct
attgaaactactgtagaaattaaaattgatgcatttatatctgaaaattatattgaagat
gaaattcaaaaaatagaaatatataagaaaatagctgctatagaagatatagaagattat
aatgatataaaagaagaactagaggatagatattctaaaatacctgagccagtgcataat
ttaatggatatagcttatataaaaagtatagctaaaaagttatttatagaagagataaaa
gaaatgccaaaagaaataagatttagatttgcaagtggtgaagatgaatataaaaagtta
tttaagatacttatggagaattataaagaaaatataattcttaaatttggaactgagcca
tatttttcatttaaaacacaagatatgaaaaaagaggataaattagaatttttaaaggaa
attttagaaaaattagaatcttaa
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