Clostridium botulinum BKT015925: CbC4_0150
Help
Entry
CbC4_0150 CDS
T01475
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
cbn
Clostridium botulinum BKT015925
Pathway
cbn03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
cbn00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
CbC4_0150
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
cbn03400
]
CbC4_0150
Enzymes [BR:
cbn01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
CbC4_0150
DNA repair and recombination proteins [BR:
cbn03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
CbC4_0150
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TRCF
UvrB_inter
DEAD
Helicase_C
CarD_TRCF_RID
ResIII
UB2H
RecG_dom3_C
IstB_IS21
MFD_D3
CdaS_N
Motif
Other DBs
NCBI-ProteinID:
AEB74833
LinkDB
All DBs
Position
150758..154267
Genome browser
AA seq
1169 aa
AA seq
DB search
MRLEGLMKPLLQNNEFENIVKNIQKDEFPIDVTGFSESGRAYFIKGIYDNEDRPIFIFTN
SDVEAKNLYEDLSLYIPNVYYFPNKEVVFYNVYAISGDLRWERLKIIREMLRQDRKIVVA
SIETLASTYISPKLYREYTINISVGDILDIEVLSEKLIQSGYQRTSIVEGKGEFSVRGGI
LDIYSPISSIPFRIELFGDEVDSIRSFNTESQRSIEKYKSMEIFPAKELVLTKESIDKGY
NFIKDDLEKVKVSLKEDKDILEKIEKDTLANLESLKESWSFENMDSFMPYFYENSSTLLD
YMENPLVFINDVQRSLGKLDTVYFEFIENYKHLLEKGNILSRQSELLVSKDELIQKITDS
NIITLNVIYKERNILKPKHKESFEQIILNSYGGKLDLLVEEINSKKQNGYKTLILSGTRP
RGERLVEALRDYNIESVYKDVVDDIEFGEVAITFGNQMKGFECPDLKLCVISDKDFFGKS
RKRTKRTNKKGIGKIKSFAELKPGDYVVHTNHGIGVYKGIKQLEVQGHKKDYLELSYTAG
DTLYVPVEQLDLVQKYIGSEGKSPKVNKLGGSEWTKAKTKVKKAINEIAEELVKLYAIRS
TLKGHKFNKDTIWQKQFEEEFPYDETPDQLTAIQEIKADMESGKAMDRLLCGDVGYGKTE
VAVRAAFKAVMDGKQVAFLVPTTILAEQHYTNLVQRFCDFPINIEMISRFKTSAQVKNIL
NEVKLGNVDVLIGTHRILQKDVAFKDLGLLIVDEEQRFGVTHKEKIKNLKKNVDVLTLTA
TPIPRTLHMSLTGIRDISVIETPPEERYPVQTYVVEFNDQLIEDAIARELDRDGQVYFVY
NRVGSIKEMAAYLAKMFPDSKVGIAHGQMPERELEKVMYDFMKKEYDILVCTTIIETGLD
IQNANTMIIYDSDKFGLSQLYQLRGRVGRTNRMAYAYLTYKKDKVLTEVAEKRLKAIKDF
TELGSGFKIAMRDLEIRGAGNLIGAAQHGHMASVGYDLYCRMLEDTIKLVRGEIDKEPIE
TTVDLKVDAYIPSNYIRDEVQKIEVYKKIANIDSEESMIEIQEELEDRFSDIPSSVDNLI
NIAYIKTIANNLGVIEVKEKPTEVIVKFSNKEYINQNLVKAIMSKYSKNVMFKLGDEPSL
GYNIRKVKKEELISEIRNFLEYLQSVVKN
NT seq
3510 nt
NT seq
+upstream
nt +downstream
nt
atgaggttagaggggctaatgaagcctttgcttcaaaataatgaatttgaaaatatagta
aaaaatattcagaaggatgaatttcctattgatgttactggattttcagaatccggaaga
gcgtattttataaagggcatatatgataatgaagatagacctatatttatttttacaaat
agtgatgtagaagcaaaaaatttatatgaagatttatctttatatatacccaatgtatat
tattttcctaataaagaggttgtcttttataatgtttatgcaatttctggggatttaaga
tgggaaagattaaaaattataagagagatgctgagacaagatagaaaaatagtagttgca
tctatagaaactttagcatcaacgtatatatctcctaagctttatagagaatatacaata
aacatttctgttggggatattttagatattgaagtgttaagtgaaaaattgattcaaagt
ggttatcaaagaactagtattgtagaaggtaaaggagaattttctgttagagggggaatt
ttagatatatattctcctatatcatcaattccctttagaatagagttgtttggtgatgaa
gtagattccataagaagtttcaatacagaatctcaaagaagtatagaaaagtataaatct
atggaaatatttcctgctaaagaattagtacttacaaaagaaagtatagataaaggatat
aatttcataaaagatgatttagaaaaagtaaaggtaagtcttaaagaagataaagatata
ctagaaaaaatagaaaaagatactttagccaatttagaatccttaaaagagagctggagt
tttgaaaatatggatagttttatgccatatttttatgaaaatagttctacgttattagat
tatatggaaaatccattagtgtttattaatgatgttcaaagatcacttggaaagttagat
acagtatactttgaatttatagaaaactataaacatcttcttgaaaaaggtaatatactt
tcaaggcaaagtgaattactagtatctaaagatgagttgatacagaaaataacagattct
aatattataactttaaatgtgatatataaagaaagaaatattctaaagcctaagcataaa
gaaagttttgaacaaataattctaaactcttatggaggaaaactagatttattagtagaa
gagattaatagtaagaaacaaaatggatataaaacattaattttaagtggaactagacca
agaggggaaagattagtagaggcccttagagattataacattgaaagtgtatataaagat
gttgtggatgatattgagtttggcgaggttgctataacctttggaaaccaaatgaaagga
tttgaatgtccagatttaaaactttgtgtaatttcggataaagattttttcggaaagtca
agaaagagaactaagagaactaataaaaaaggtataggaaaaattaagagttttgcagaa
ttaaaacctggagactatgttgttcatacaaaccatggaataggagtatataagggaata
aagcaattagaagtccaaggtcataaaaaagattatttagaacttagctatactgctgga
gatactttatatgttcctgttgaacaactagatttagtacaaaagtacataggtagtgaa
ggaaagtctcctaaggtaaataagcttggtggtagtgaatggacaaaagccaaaactaag
gttaaaaaagctataaatgaaattgcagaagaacttgtaaagctctatgcaataaggtct
acattaaaagggcataaatttaacaaagataccatttggcaaaagcaatttgaagaagag
ttcccatatgatgaaaccccagatcaacttacagctattcaggaaattaaagctgatatg
gaatcaggaaaggctatggatagactattatgtggggatgttggatatggtaaaacagaa
gttgcagtaagagcagcttttaaagctgtaatggatggaaagcaagtagcgtttttagta
ccaactacaatacttgcagaacaacattatactaatttagttcaaaggttctgtgatttc
cccattaatatagaaatgataagtagattcaaaacatctgctcaagttaaaaatatattg
aacgaagtaaaacttggtaatgtagatgttttaataggtactcatagaattcttcaaaaa
gatgttgcattcaaggatttaggacttttaatagttgatgaagagcagcgttttggagtt
acacataaggaaaaaatcaagaatttaaaaaagaatgtggatgttttaacattaacagct
acacctataccaagaactcttcatatgtctcttacaggtataagggatattagtgttata
gagacgcctcctgaagaaagatatccagttcaaacatatgtagttgaatttaatgatcaa
cttatagaagatgctatagctagagagttggatagggatggtcaggtatattttgtgtat
aacagggtaggatctataaaagaaatggcagcatatctagctaagatgtttccggattca
aaggtaggaatagctcatggtcagatgccagagagagaacttgaaaaagttatgtatgat
ttcatgaaaaaagaatatgacatattagtttgcacaactataattgagacgggactagat
attcaaaatgctaatactatgataatatatgattcagataaatttgggttatctcaacta
tatcagttacgtggtagagttggaagaactaatagaatggcatatgcttatttaacatat
aagaaggataaagttctaacggaagttgcagaaaaaaggctaaaagctattaaggatttt
actgagcttggatcaggatttaaaatagccatgagggatttagaaataagaggtgcgggt
aatttaataggagctgctcagcatggtcatatggcatctgtaggatatgatttatattgt
agaatgcttgaagacactataaaacttgttagaggagaaatcgataaagaacctatagaa
actactgttgatttaaaagtagatgcatatataccaagtaattatataagagatgaagtt
cagaaaatagaagtatacaaaaaaattgctaatatagattcagaagaaagtatgatagag
atacaagaagaattagaagatagattttcagatataccatcttcagtggataatcttata
aatattgcatatataaaaactattgcaaataacctaggggtcatagaggttaaggaaaag
ccaacagaagttattgtgaagttcagtaataaagaatatataaatcaaaatcttgtaaaa
gctataatgagtaaatatagtaaaaatgttatgtttaaattaggtgatgaaccatcactt
ggttataatataaggaaagtgaagaaggaagaattaataagtgaaataagaaactttcta
gaatatttacaatcagtagtaaaaaactga
DBGET
integrated database retrieval system
