Clostridium botulinum A ATCC 3502: CBO3487
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Entry
CBO3487 CDS
T00533
Symbol
rpoC
Name
(GenBank) DNA-directed RNA polymerase beta' chain
KO
K03046
DNA-directed RNA polymerase subunit beta' [EC:
2.7.7.6
]
Organism
cbo
Clostridium botulinum A ATCC 3502
Pathway
cbo03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
cbo00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
CBO3487 (rpoC)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
cbo03021
]
CBO3487 (rpoC)
03400 DNA repair and recombination proteins [BR:
cbo03400
]
CBO3487 (rpoC)
Enzymes [BR:
cbo01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
CBO3487 (rpoC)
Transcription machinery [BR:
cbo03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
CBO3487 (rpoC)
DNA repair and recombination proteins [BR:
cbo03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
CBO3487 (rpoC)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_3
RNA_pol_Rpb1_4
RPOC_hybrid
Apocytochr_F_C
Peptidase_M23
Motif
Other DBs
NCBI-ProteinID:
CAL85048
UniProt:
A5I7L3
LinkDB
All DBs
Position
complement(3712790..3716326)
Genome browser
AA seq
1178 aa
AA seq
DB search
MFELNNFDALQIGLASPEKIREWSRGEVKKPETINYRTLKPERDGLFCERIFGPMKDWEC
HCGKYKRIRYKGIVCDRCGVEVTKAKVRRERMGHIELAAPVSHIWYFKGIPSRMGLILDM
SPRALEKVLYFASYVVLDPKETPLLKKQLLNEKEYRESIDKYGDDSFVAAMGAEAVKTLL
DEIDLEQSSIELKEELKTSTGQKKIRIIRRLEVVESFRKSGNRPDWMVIDVIPVIPPDLR
PMVQLDGGRFATSDLNDLYRRVINRNNRLKKLLDLGAPDIIVRNEKRMLQEAVDALIDNG
RRGRPVTGPGNRPLKSLSDMLKGKQGRFRQNLLGKRVDYSGRSVIVVGPELKMYQCGLPK
EMALELFKPFVMKKLVQNGLAHNIKSAKRMVERVQPQVWDVLEEVISDHPVLLNRAPTLH
RLGIQAFQPVLVEGRAIKLHPLVCTAYNADFDGDQMAVHVPLSVEAQAEARFLMLAAHNI
LKPSDGKPVSVPTQDMVLGSYYLTMDKDGVKGEGKVFSCPEEVLMAYQCKAVDIHAKIKV
RLKKVIDGETIEGIIETTPGKIIFNESIPQDLGYIDRTVPENKLKLEVDFLVSKKTLGGI
INRCYMKHGATKTSIMLDKIKAKGYHYSTIGAITISTSDMVVPEAKRELLQNTEKQVEKI
QKMYRRGFISEEERYEKVIDLWTKTTEDVANALMASLDSFNPIYMMADSGARGSKSQIKQ
LAGMRGLMANPSGKIIELPIKASFREGLDVLEYFISTHGARKGNADTALKTADSGYLTRR
LVDVSQDVIVRQEDCGTEEGYEVSEIKEGNEVIEPLVERLSGRYPSEDIINPTTGEVIVK
RNTYMNEDIAKKVSDAGIKKVKIRSVFTCKSKHGVCARCYGMNMATSQKIHIGEAVGIVA
AQSIGEPGTQLTMRTFHTGGVAGADITQGLPRVEELFEARKPKGLAIVSEVSGTVKMEET
KKKRTIIVVTDDGEEVSYDIPFGSRIKVKNGDIISAGDEITEGSINPHDILRIKGVDGVK
NYLLSEVQKVYRLQGVDINDKHLEVVIRQMTRKIKIEDSGDTELLPGTMIDVFDFEEANR
EILEKGGEPAVGRIALLGITKAALATDSFLSAASFQETTRVLTDAAIKGKIDPLLGLKEN
VIIGKLIPAGTGMTRYRSIQINTDDENIEEDSMDSIEV
NT seq
3537 nt
NT seq
+upstream
nt +downstream
nt
ttgtttgagttaaataattttgatgctttacaaataggtttagcttcaccagaaaagata
agagagtggtcaagaggtgaagttaaaaagccagagactataaattatagaacactaaaa
ccagaaagagatggtttgttctgtgaaagaatttttggtcctatgaaggattgggaatgc
cattgtggtaaatataaaaggataagatataagggcatagtttgtgatagatgcggagta
gaggttactaaagctaaagtaagacgtgagagaatggggcatatagaacttgctgcccct
gtatctcatatatggtatttcaaagggattccatcaagaatgggattaatattagatatg
tctccaagagctttagaaaaagttttatactttgcttcgtatgtagtattagatccaaaa
gaaacacctcttttaaagaaacaattattaaatgaaaaagagtatagagaatctatagac
aaatatggagatgacagctttgtcgcagcaatgggtgcagaagctgtaaagactctttta
gacgaaatagatttagaacaatcatctattgaacttaaagaagagttaaaaacaagtaca
ggacaaaagaaaataagaataataagaagattagaggtagtagaatcttttagaaaatca
ggaaatagacctgattggatggttatagatgttataccagtaattccacctgatttaagg
ccaatggttcaactagacggaggaagatttgctacatctgatttaaatgatttgtataga
agagttataaatagaaataacagattaaaaaaattgttagacttaggggctccagatata
attgtaagaaatgaaaaaagaatgcttcaagaagcagtagatgctttaatagataatggt
agaagagggagaccagtaacaggaccaggaaatagacctcttaaatcattatcagatatg
ttaaagggtaagcaaggtagatttagacaaaacttactaggaaagcgtgttgactattcg
gggcgttcagttatagttgtaggaccagaattaaaaatgtaccaatgtggtttaccaaaa
gaaatggctcttgaattatttaaaccatttgttatgaaaaaacttgttcaaaatgggtta
gcacataatataaaaagtgctaagagaatggtagaaagagttcaaccccaggtttgggat
gtattagaagaagttatttctgatcacccagtattattaaaccgtgcccctactcttcac
agattaggaattcaagccttccaacctgtgttagtagagggaagagcaattaaacttcat
ccacttgtatgtacagcatataatgcggacttcgatggagaccaaatggctgttcacgta
cctttatcagttgaagctcaagcagaggcaagattcctaatgctagcagcacataatata
ttaaaaccatctgatggtaaaccagtgtctgtacctacacaagatatggttttaggttct
tattacttaacaatggataaagatggagtaaaaggtgaaggaaaagtattttcttgtcca
gaagaagtacttatggcatatcaatgcaaagctgtcgatatacatgctaaaataaaagta
agattaaagaaagttatagacggagaaactattgaaggaataatagaaacaacgccagga
aaaattatatttaatgaatctataccacaggatttaggatatattgatagaacagtacct
gaaaataaattaaaactagaagtagattttcttgtatctaaaaagacattaggtggaata
attaacagatgctatatgaaacatggtgcaacaaaaacttctataatgttagataaaata
aaagcaaaaggatatcattattctactataggagctattactatttctacttcagatatg
gtagtgccagaagctaaaagagaattactacaaaatacagaaaaacaagtagaaaagata
caaaaaatgtatcgtagagggtttatatctgaagaagaaagatatgaaaaagttattgac
ctttggactaaaacaacagaagatgtagctaatgctcttatggcaagtttggatagtttt
aatcctatatatatgatggctgattcaggagctagaggttctaaaagtcagataaaacaa
ttagcaggtatgagaggtcttatggctaatccatcaggtaaaattatagagttaccaata
aaagcttcttttagggaaggcctagatgtgttagagtattttatatcaacacatggtgct
agaaaaggtaacgcagatacagctttaaaaacagctgactcaggatatttaactagaaga
cttgttgatgtttcacaggatgttatagtaaggcaagaagattgtggaacagaagaagga
tatgaagtatctgaaataaaagaaggaaatgaagtaatagagcctttagtcgaaagatta
tcaggtagatatccttcagaagatattattaatcctacaacaggagaagtaatagtaaaa
agaaacacatatatgaatgaagatatagctaagaaggtatcagatgcaggaattaaaaaa
gttaaaataagatctgtattcacttgtaaatcaaaacatggtgtttgtgctagatgttat
ggtatgaatatggctacatcacaaaaaattcatataggtgaagcagttggtattgttgct
gctcaaagtataggagaaccgggaactcagcttacaatgagaacattccatacaggtggt
gttgctggagctgatataactcaaggtcttccaagggttgaagagcttttcgaagctaga
aaacctaaggggttggctattgtaagtgaagtatcaggaacagtaaaaatggaagaaact
aagaaaaaaagaacaataatagttgtaactgatgacggcgaagaagtttcctacgatatt
ccatttggttctagaataaaagttaaaaatggagatattatatcagcaggagatgaaata
acagaaggttcaataaatccacatgatattttaagaataaaaggtgttgacggagttaaa
aattatcttttatcagaagttcaaaaagtttatagactacaaggtgttgatataaatgat
aaacatcttgaagtagttataagacaaatgacaagaaagataaaaattgaagattcagga
gatacagaattattacctggaacaatgatagatgtttttgattttgaagaagccaataga
gaaatattagaaaaaggtggagaaccagcagtaggtagaatagctttattaggaataaca
aaagctgcactagctacagattcattcctttcagctgcatcattccaagaaactacaaga
gttcttacagatgctgctatcaaaggaaaaattgatccactgttaggcctaaaagaaaat
gtaattattggtaagttaatacctgcaggtacaggtatgacaagatatagatctattcaa
ataaatactgatgatgaaaatattgaagaagattccatggattcaatagaggtatag
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integrated database retrieval system
