Clostridium botulinum A ATCC 3502: CBO3539
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Entry
CBO3539 CDS
T00533
Symbol
mfd
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
cbo
Clostridium botulinum A ATCC 3502
Pathway
cbo03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
cbo00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
CBO3539 (mfd)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
cbo03400
]
CBO3539 (mfd)
Enzymes [BR:
cbo01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
CBO3539 (mfd)
DNA repair and recombination proteins [BR:
cbo03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
CBO3539 (mfd)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
UvrB_inter
TRCF
CarD_TRCF_RID
Helicase_C
ResIII
RecG_dom3_C
IstB_IS21
UB2H
Motif
Other DBs
NCBI-ProteinID:
CAL85099
UniProt:
A5I7R4
LinkDB
All DBs
Position
complement(3781965..3785471)
Genome browser
AA seq
1168 aa
AA seq
DB search
MRLEGLVSPLSLSEDFKSLLNNINLNKFPIGAYGLSDSGKNYFISNIFANVDESLVIFTH
SDVEARKIYEDLSLYTTEVYYLPTKEVVFYNIYAISGDLRWERLKVINEILSPKKKIIVT
CIESLESAYIPKELYTKYTFKLSVGDIIEIKLLEEKLIKSGYERVDIVENKGEFSARGGI
IDIYPPISSEPYRLEFFDDEIDSIRNFNVNSQRSIEKVNNINIFPAKEIILEEENISLGL
KNIKTDLDKLVLKLNKKEDKEKIQSIINSNLEQLNESWSFENIDTFLPYFYNKTNSLLDY
IEGSLIIIDDVKRCLGKLDSTYLEFNEDYDKFLEKGCILPKQAEIVHDKERMIEQLEFKK
IINIENIKKTIDRLKPKSVLTFNQTTLQGYNGKIEFLIEDIKEKKKEKYKILILSGTRSR
GERLVNHLRDMGVESSYKDIVREIKPGEVVITFGNQGNGFQYYDIKLSVISDKDIFGQFK
KKGKKKQNKKGTGKIKSFTELKPGDFVVHANHGIGVFKGIKQLELQGNKKDYLELIYHSD
DKLYVPVEQLDMVQRYIGSEGKKPKVSKLGSSEWTKTKNKVKKSIEEIAEDLVKLYAIRA
TLKGYKYSDDTVWQKQFEEEFPYEETPDQLLAIEDIKRDMESPKPMDRLLCGDVGYGKTE
VAIRAAFKAVMDGKQVAFLVPTTILAQQHYNNFKQRFSDFPITVDVISRFRTLSEQKATI
KSIKEGNVDILIGTHRILQKDIKFKDLGLLIIDEEQRFGVKHKEKMKNLKKNVDVLTLSA
TPIPRTLHMSLVGVRDISVIETPPEERYPVQTYVVEYNDQLIRDSILREISRGGQIYFVY
NRVESIHEMASYISKLVPEGRVQIAHGQMKEKELENVVLDFTENKFDILIATTIIETGMD
IKNVNTMIIYDADKMGLSQLYQLRGRVGRTNRMAYCYLTYKRDKILTEVAEKRLKAIKDF
TELGSGFKIALKDLEIRGAGNMMGSAQHGHMASIGYDLYCRMLEDTIKLVRGDIDKEPVE
TSVELKIDAYIPNTYIKDETQKIEVYKKIASIDSKEEFMDIEEELEDRFSDIPISVYNLM
NISYIRSLGKKVDIEEIKEISNEVVFQFEDKSSLREKIVKIIMDKYSKEVAFKLNEKPAI
GYNIKNIKKEQLLPIIRNFLEHIVNNNQ
NT seq
3507 nt
NT seq
+upstream
nt +downstream
nt
atgagactagaaggtttagtatcacctttgagtttaagtgaagattttaaaagtttatta
aataatataaatttaaataaatttcctataggtgcatatggtttgtcggattctggtaaa
aattactttatcagcaatatatttgctaacgtggatgaatctttagtgatttttactcat
agtgatgtggaagctagaaaaatatatgaagatttaagtttatatacaacggaagtatat
tatttacctactaaagaagtcgtattttataatatttatgctatatcaggagatttaaga
tgggaaagacttaaagttataaatgaaattttaagtcctaagaagaaaataatagttact
tgtatagaatctttagaatctgcatatatacctaaagaattatatacaaagtatacattt
aaattgtctgttggagatattatagaaataaagttattagaagaaaagttgataaaaagc
ggatatgaaagagtagatatagtagaaaataaaggagagttctctgcaagaggaggaata
atagatatatatcctcctatttcatcagaaccctatagactggaattttttgatgacgaa
atagattctataagaaactttaatgtgaattctcaaagaagtattgaaaaagttaataat
ataaatatatttccagctaaagaaattatacttgaagaagaaaatataagcttaggatta
aaaaatataaaaactgatttagataaattggttctgaaattaaataaaaaggaagataaa
gagaaaatacaaagcataataaatagcaatttggaacagttaaatgaaagctggtctttt
gaaaatatagatacttttcttccttatttttacaacaaaactaacagtttattagattat
atagaaggttctttaattattatagatgatgttaaacggtgcttaggtaagttagatagt
acttatttagagtttaatgaagactatgataaatttttagaaaagggatgcatattacct
aaacaggcggaaattgttcatgataaagaaagaatgatagagcagttagaatttaaaaaa
ataattaacatagaaaatataaaaaaaactatagatagattaaagcccaagtctgtttta
acatttaatcaaacaaccttacaggggtataatggtaaaattgaatttttgatagaggat
ataaaagaaaagaaaaaagagaaatataaaatattaattttatcaggaactagaagtaga
ggagaaagattagtaaaccatcttagagatatgggagtagagagttcctataaagatata
gtaagagaaattaaaccaggagaagtagttataacttttgggaatcaagggaatggcttt
cagtattatgatataaaattaagtgttatatctgataaggatatatttggacaattcaaa
aagaagggcaaaaagaagcagaataaaaagggaacaggaaaaattaaaagtttcactgag
cttaaaccgggagatttcgtagtccatgctaaccatggtattggggtatttaaaggtata
aagcaattagaattacaaggtaacaaaaaggattatttggaattaatatatcattcagat
gataagctttatgtaccagtagaacagttagatatggtgcaaagatatataggcagtgag
ggtaaaaaacctaaagtaagtaagctaggaagttcagaatggactaaaactaaaaataag
gttaaaaaatctatagaagaaattgcagaggatttagtaaaattatatgctataagagct
accctaaaaggctataaatattctgatgatacagtatggcaaaagcaatttgaagaagaa
tttccttatgaggaaacaccagatcaattgttagctatagaagatataaaaagggatatg
gagtcaccaaagcctatggatagacttttatgtggagacgtgggttatggtaaaactgag
gttgctataagagcggcctttaaggcagttatggatgggaagcaggtagcatttctagtt
cctactaccatattagctcaacaacattataataattttaaacaaagattttcggatttc
cctataacagttgatgtcataagtagatttagaactttatccgaacaaaaggctactata
aagtctattaaagaaggaaatgtagatatactaataggaactcatagaattctccaaaaa
gatataaaatttaaggatttaggattattaataatagatgaggaacaaagattcggagta
aagcataaagaaaagatgaaaaatttaaagaaaaatgtagatgttttaactctaagtgcc
acccctatacctagaactttgcatatgtcattagtaggtgttagggatataagtgttata
gaaactcctccagaggaaagatatcctgttcaaacttatgtagtagagtataatgatcaa
ctgataagagattccatattaagagaaattagtagaggtggacaaatttattttgtatac
aatagagttgagagtattcatgagatggcgtcatatatatcaaaactagtaccagaagga
agagttcagatagctcatggacaaatgaaagaaaaagagctagaaaacgtagtattggac
tttacagaaaataaatttgatatattaatagccacaacaataatagaaacaggtatggat
ataaaaaatgttaacactatgattatatatgacgcagataaaatgggattatctcagcta
tatcaattaagaggaagagtaggtagaacaaatagaatggcatattgttacttaacctat
aaaagggataagatacttacagaagtagcagaaaaacgattgaaagccataaaggatttt
acggaattaggctcaggttttaagatagctttaaaggatttagaaataagaggagcaggt
aatatgatgggatctgcgcaacatggccatatggcttctataggctatgacctttattgc
aggatgctcgaggatactataaagttagttagaggtgatatagataaagagccagtagaa
acttcagtagaattaaagatagatgcttatataccaaatacttatataaaagatgaaaca
caaaagatagaagtgtataaaaagattgcatctatagattctaaagaagagtttatggat
atagaagaggaattagaagatagattttcagatataccaatatccgtttataatttaatg
aatatatcttatataagaagcttaggtaagaaggttgatatagaagaaataaaagaaatt
tcaaatgaagttgtttttcaatttgaagacaagagtagtttaagagaaaaaattgtaaag
attataatggataagtattcaaaagaagtagcatttaaattaaatgaaaagcctgctata
ggatataatataaagaatataaaaaaagaacaattattaccaattataagaaatttttta
gaacatatagtaaacaacaatcaataa
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