Candidatus Viadribacter manganicus: ATE48_10395
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Entry
ATE48_10395 CDS
T04422
Name
(GenBank) transcription termination factor Rho
KO
K03628
transcription termination factor Rho
Organism
cbot
Candidatus Viadribacter manganicus
Pathway
cbot03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
cbot00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
ATE48_10395
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
cbot03021
]
ATE48_10395
03019 Messenger RNA biogenesis [BR:
cbot03019
]
ATE48_10395
Transcription machinery [BR:
cbot03021
]
Prokaryotic type
Bacterial type
Other transcription-related factors
Transcription termination factor
ATE48_10395
Messenger RNA biogenesis [BR:
cbot03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Other RNA degradosome components
ATE48_10395
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Rho_RNA_bind
ATP-synt_ab
Rho_N
OB_RNB
AAA_22
AAA
Mor
Motif
Other DBs
NCBI-ProteinID:
ANP46295
UniProt:
A0A1B1AIB3
LinkDB
All DBs
Position
2012860..2014152
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AA seq
430 aa
AA seq
DB search
MTETQALEELTSLTLQELKRKPPAELLALAETLEIEGANTLRSQDMMFAILKTVAERGVE
IGGAGVVEILSDGFGFLRSPQSNYLPGPDDIYVSPQQIRKFGLRTGDTVEGQIKSPKDGE
RYFALTKVNSVNFEDPERVRHKVHFDNLTPLYPTERLKMELDDPTIKDKTGRIIDIVAPI
GKGQRSLIVAQPRTGKTVIMQNIAKAIEANHPEVFLIVLLIDERPEEVTDMQRSVKGEVV
ASTFDEPATRHVAVAEMVIEKAKRLAEHGKDVVILLDSVTRLGRAYNTVVPSSGKVLTGG
VDANALQRPKRFFGAARNLEEGGSLTIIATALIDTGSRMDEVIFEEFKGTGNSELQLDRK
VADRRIFPAIDVLKSGTRKDELITPKEHLQKMYVLRRILSPMGTQDAIEFLLDKLKGSKN
NDDFFQSMNT
NT seq
1293 nt
NT seq
+upstream
nt +downstream
nt
atgactgaaacacaagcactcgaagagctcacctcactcacgctgcaagagctcaagcgt
aagccgccggctgaattgctggcgctcgccgaaaccctcgagatcgagggcgcgaacacg
ctgcgcagccaagacatgatgttcgccatcctgaaaaccgtcgctgagcgcggcgttgag
atcggtggtgcgggcgtcgttgaaatcttgtccgacggcttcggcttcctgcgctcgccg
caatcgaactacttgccgggtccggacgacatttacgtctcgcctcagcagatccgtaaa
tttggtctccgcaccggcgacaccgtcgaaggccagatcaaatctccgaaagacggcgaa
cgctatttcgccctgaccaaggtgaactcggtcaatttcgaggatcccgaacgcgttcgg
cacaaggttcacttcgataacctgacgccgctctacccgaccgagcgcctcaagatggag
ctcgacgatccgaccatcaaagacaaaaccggccgcatcatcgacattgtcgcgccgatc
ggcaaaggccagcgttcactgatcgtcgcgcagccgcgtacgggtaaaaccgtcatcatg
cagaacatcgccaaggcgatcgaagcaaaccacccggaagtgtttctgatcgttctgctg
atcgacgaacgccccgaagaagtcaccgacatgcagcgcagcgtgaagggcgaagtcgtt
gcctccacgttcgacgagccggccacgcgtcacgttgcggttgcggaaatggtgattgag
aaagccaagcgcctcgccgaacacggaaaggatgttgtgatcctgctcgactcggttacg
cgcctcggccgcgcctacaacaccgtcgtgccctcctcgggcaaggtgctgactggcggt
gtcgatgctaacgcgctgcaacgtccgaagcgtttcttcggcgccgcgcgtaatctcgaa
gaaggcggctcgctcaccatcatcgcgacggccctcatcgataccggctcgcgcatggac
gaagtcatcttcgaagagttcaagggcacgggtaacagcgaactccaactcgaccgtaag
gtcgcggaccgccgcatcttcccggccatcgatgtcttgaagtccggcacgcgcaaggat
gagctcatcacgccgaaggagcacctgcagaagatgtacgtgctccgccgcatcctcagc
ccgatgggcacgcaggacgcgatcgagttcctcttggacaagctcaaaggctcgaagaac
aacgacgacttcttccagtcgatgaacacctaa
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