Chryseobacterium balustinum: EB354_18555
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Entry
EB354_18555 CDS
T07847
Symbol
mfd
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
cbp
Chryseobacterium balustinum
Pathway
cbp03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
cbp00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
EB354_18555 (mfd)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
cbp03400
]
EB354_18555 (mfd)
Enzymes [BR:
cbp01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
EB354_18555 (mfd)
DNA repair and recombination proteins [BR:
cbp03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
EB354_18555 (mfd)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TRCF
DEAD
Helicase_C
UvrB_inter
CarD_TRCF_RID
ResIII
RecG_dom3_C
UB2H
Choline_kin_N
PPARgamma_N
Latarcin
DUF5691
Motif
Other DBs
NCBI-ProteinID:
AZB31099
UniProt:
A0A3G6TTL1
LinkDB
All DBs
Position
complement(3997323..4000685)
Genome browser
AA seq
1120 aa
AA seq
DB search
MQLKNISEKFLPDLLKNEFGKEIFSQIDTQPHLSVRGSAGSSASVFAAELFLTHKKTVLF
LSDDKEEALYINSEMEDLLGKESVLYFPATHMEPYQVEKTQNANLVLRTEVLNKINSEKS
PKVIVAYIGALSEKVLKKEDFKAISHQIKTGDHLDFDFVDELLNHYQFNQTDFVSEPGEF
SVRGGIVDVFSYSNEKPYRITFFGNEVENIKTFDIETQLSVDKVDGFQLVSNMNFSVSGT
RVSFLEILPKESFVISKNGIVGLQKLRTFYEKSLEKFENLNKDIAHRSPQELFISDEEFL
FDYKKFKTVDFSSVGIESIKSQEVKLNQTAQPSFHKNFQLLIEDLQEKKEEGYDIWISFS
TEKQKERLVSIFDELGHQLAFKSFKSELHEGFVDPDHKILVYTDHQIFDRYQRYKAKNTF
AKSEQLTLKDLMSLKVGDYIAHIDHGIGKFMGLVKVNNDGKIQECFKLTYKNGDLLYVSI
HSLHKISKYNGPDGKEIVLSKLGSPAWKSLKQKTKARVKQIAFDLIKLYAERKTAKGFQY
SPDSYLQNELEASFAYEDTPDQEKATLDVKKDMEDEGVMDRLICGDVGFGKTEVAIRAAF
KAATDGKQVAILVPTTILAFQHYRSFKERLKDFPVNISYLNRFRTAKQKSETLQGLEDGK
MDIVIGTHQLASDKVKFKDLGLLIIDEEHKFGVSVKDKLKTMKTNVDTLTLTATPIPRTL
QFSLMAARDLSVIKTPPPNRQPVDTNIIGFSEEIIRDAVSYELQRDGQVYFINNRIENLK
DIAGLIQRLVPDARVITAHGQMEGKQMEQNVLDFMDGKYDVLVATTIIESGVDVPNANTI
FINDAQRFGMADLHQMRGRVGRSNRKAFCYLITPPFDMMTSDARKRLEAIEQFSDLGSGF
QIAMKDLEIRGAGDLLGGEQSGFINEMGFETYQKMMQEALEELKDDENFENLFENEEDRN
KLFKSVKEVNIDTDLELMLPDFYVSSTEERLSLYQKLAEIDNEKDLEKFESELKDRFGNL
PSEAVNLLKSVALKWLAAEIGFEKIVMKNGIFLGYFPSNPQDKFYQTDKFRHIISYLTQN
PAQAQLKEKAGKDGNNLMMRKDKVKNVDEVNVLLKSILGI
NT seq
3363 nt
NT seq
+upstream
nt +downstream
nt
atgcagttaaaaaatatcagcgaaaagttccttcccgatttactaaaaaatgaatttgga
aaagaaattttctcacaaattgatacccagccgcatctttctgtaagaggaagtgcaggt
tcttcagcttctgtttttgcagccgagctctttcttactcacaaaaaaacggttcttttt
ctttcagatgacaaagaagaagcattatacatcaacagtgaaatggaagatttgttggga
aaagaaagtgtactttattttccggccactcacatggagccttatcaggttgagaaaact
cagaatgccaatttggtattgagaactgaggttttgaataaaataaattcagaaaaatct
ccaaaagttattgtcgcttacattggagctttgtctgaaaaagtgttgaagaaagaagat
tttaaagcgatttctcatcaaataaaaaccggagaccatctcgattttgattttgttgat
gaattgcttaatcattatcagttcaatcaaacagattttgtttccgaaccgggagaattt
tctgtacgagggggtattgtcgacgtcttttcttactctaacgaaaaaccttaccggatc
actttctttggaaatgaagtagaaaatattaaaaccttcgatatagaaacccagctttca
gttgataaagtagacggttttcaattggtttctaatatgaatttttcagtttcgggaacg
agagtttctttccttgaaattttgcctaaagaaagtttcgttatttccaaaaatggaatt
gttggtcttcaaaagctgagaacattttatgaaaaatctttagagaaatttgaaaatcta
aataaagatattgcgcacagaagtccgcaggagttatttatttcggatgaagaatttctt
ttcgattataagaaattcaaaaccgttgatttcagcagcgtaggaattgaaagcataaaa
tctcaagaagtaaaacttaatcaaactgcacaaccttcgtttcacaagaattttcagtta
ttaattgaagatttgcaggagaaaaaagaggaaggttatgatatatggatctctttttct
actgaaaagcaaaaagaaagattggtgtctatttttgatgaactgggacatcagttggct
tttaaaagttttaaatctgaacttcacgaaggttttgtagatcccgatcacaaaattctg
gtctacaccgatcatcagatttttgaccgttaccaaagatacaaagcgaaaaatacattt
gccaaatctgagcagctaacgctgaaagatttgatgtcgctgaaagtaggagattatatt
gcccacatcgatcatggtatcggaaaatttatgggattggtaaaagtcaacaacgacgga
aaaattcaagaatgttttaaattgacgtataaaaatggagacttattatatgtaagtatt
cattcccttcataaaatttcaaaatataatggtccggatggaaaagagattgttctaagc
aagctcggttctcctgcatggaaatcattaaaacaaaaaacaaaagcgagagtaaaacag
attgctttcgatttgattaaattatatgcggaaagaaaaaccgcaaaaggattccaatat
tcgccagattcttatcttcaaaatgagttggaagcaagttttgcttatgaagatacgcca
gatcaggaaaaagcaactcttgatgtcaaaaaagatatggaagatgaaggagtgatggat
cgtttgatttgtggtgatgttggtttcggaaaaacggaagttgccattcgtgctgcattt
aaagcggctacagatggtaagcaagttgctattttggtgcccactaccattctggctttt
caacattacagaagtttcaaggaaagattaaaagattttccggtgaatatttcttatctt
aatagattccgaacagcaaaacaaaaatctgaaactttacaagggctggaagacggtaaa
atggatatcgttattggtacccatcaattggcttcagataaagtaaagtttaaagattta
ggcttattaattattgatgaagaacataagtttggagtttctgtaaaagataaactcaaa
acaatgaaaactaatgttgataccttgacattgactgcaacgccgattccgagaacttta
cagttttctctaatggctgcacgagatctttcggtgatcaaaacgccaccaccaaacaga
cagccggttgatacgaatattattggatttagcgaagaaattattcgtgatgcggtttct
tatgaattgcagcgtgatgggcaggtttatttcatcaataacagaattgaaaacctgaaa
gatattgcaggtttgattcaaagattggttcctgatgcaagagttattaccgcacacgga
caaatggaagggaagcaaatggaacagaacgtcctggattttatggatggaaaatatgat
gttttggtcgcaactacgattattgaaagtggagtagatgttccgaatgcgaatacaatt
ttcattaatgatgcgcaacgtttcggaatggcagacctacatcagatgagaggaagagtt
gggcgaagcaacagaaaagcattttgctaccttattacgccgccttttgatatgatgact
tccgatgctagaaaacgtttggaagcaattgaacaattttcagatttaggaagtggtttc
cagattgcaatgaaagatttggaaattcgtggagcaggagatttattaggaggcgaacaa
agcggatttattaatgaaatgggatttgaaacctatcaaaaaatgatgcaggaagcgctt
gaagaattgaaagatgatgaaaattttgaaaatctttttgaaaatgaagaagaccgaaat
aagcttttcaaatcggtaaaagaagtcaatatcgatactgatttggaactgatgcttcca
gatttttatgtttcgagtactgaagaaaggttgtcgctttatcagaaattagccgaaatt
gataatgaaaaagatctggagaaatttgaatctgagctgaaagaccgttttgggaatttg
ccaagtgaagctgttaacttactgaaaagtgtcgcactgaaatggttggctgccgaaatt
ggtttcgaaaaaattgtaatgaaaaacggaattttcttaggctattttccaagtaacccg
caagataagttttatcagaccgataagttcagacatattatttcttatttaactcaaaat
cctgcacaagcccagttgaaagagaaagcaggcaaagacggaaataatctgatgatgcga
aaagataaagtgaaaaatgtagatgaggtgaatgttttgctcaaatctattttaggaatt
taa
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