Caenorhabditis briggsae (nematode): CBG_08488
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Entry
CBG_08488 CDS
T01054
Symbol
Cbr-herc-1
Name
(RefSeq) Protein CBR-HERC-1
KO
K10615
E3 ubiquitin-protein ligase HERC4 [EC:
2.3.2.26
]
Organism
cbr
Caenorhabditis briggsae (nematode)
Pathway
cbr04120
Ubiquitin mediated proteolysis
Brite
KEGG Orthology (KO) [BR:
cbr00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
04120 Ubiquitin mediated proteolysis
CBG_08488 (Cbr-herc-1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04121 Ubiquitin system [BR:
cbr04121
]
CBG_08488 (Cbr-herc-1)
Enzymes [BR:
cbr01000
]
2. Transferases
2.3 Acyltransferases
2.3.2 Aminoacyltransferases
2.3.2.26 HECT-type E3 ubiquitin transferase
CBG_08488 (Cbr-herc-1)
Ubiquitin system [BR:
cbr04121
]
Ubiquitin ligases (E3)
HECT type E3
CBG_08488 (Cbr-herc-1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
HECT
RCC1
RCC1_2
DUF6446
FapA
Motif
Other DBs
NCBI-GeneID:
8582431
NCBI-ProteinID:
XP_045100766
LinkDB
All DBs
Position
I:11279772..11303387
Genome browser
AA seq
1017 aa
AA seq
DB search
MHAELLGCGQTGEGQLGARLSEPMIRVPERIIGAPNDADGTAVKAVACGEQHTIFLTKDR
KMWSVGSNVDGQLGRGKRSEGSFSIYPVSLTSGVGIVQIAAGRAHSLAVADDGRVFAWGS
NEHGQLGMENTITWQEMPKRINQLNEVVQVASGSDHCIALTEDGRVYVWGEQADGRCIHH
PELVEHLNAIPIVRVEAGARHCVAISASGAVFTWGQNNSGELGMDDFRPQTSVHHVTQMD
GLGVVEAACGDNHTILLTHCGRTFSFGSDALGQCGFGKKLEKRPNPTAVSDLIGSHVTRI
AAGACHTIAIIRGSPYPFGLNSSGQLGNGKIMTQSTPRKTDDLDHVTAVFAGYHQTFFIR
SAGSIEQNEIVGPSCPVKMPSKIDREIFEKALRSGEKLDLMALVESVFSSLSSINNSFLF
QDERRFNVGIDRSHGIDLDQVMETFMLFDELASKKLFSDLIADSLSIAYASWNSKVSCVE
GLRLFFILPWLPVFTENVTLDTIFKVHTPFIEALYSVSESMQKTLGNWWSKLSTRHFRRQ
VIVYKRAVETILRAGKGPSKARQFLLTLQRLFLINQNFHIVPLETFYIEDLGQIHNIKLE
YYNMVTKQQPFKDESDYWTHYPFLLNGAAKGEVLFVEAGLIQAMHAQSAMIASGGLIEGV
TMQHCDLTVRRDFIVSDTMHKLAGFSEIDVRKPLKVTIVGEEADDAGGVRKEFFLIVMRK
ILQPEYGMFTENEESRLVWFSGMPAEFCEREQFRQLGRLVGLAVYNNVIVPFPFPLALYK
YLLDIEPTLEDLCELSPTEGRGLQSLLDYEEDDVEDVFSLTFSITFSIFGEIKTVELIPG
GDEKPVTKENREEYVKLYVSHRLELGYNNEIANQAREFRRGFSDALHSRVLKFFQPRELK
EQISGTENYDWNEFRELVTYKGEYTASHPAVKTFWKAFFALDEDEKKKFLQFLSGSTRIP
VGGMKDLHPFIQPTAPETLPVAHTCFNLLDLPNISDDVEMLRRLRISIEHTEGFTLV
NT seq
3054 nt
NT seq
+upstream
nt +downstream
nt
atgcacgcagaactgctcggatgtggacagacgggagaaggacagctgggtgcgaggctc
tcggagccaatgatacgagttccagagagaattatcggtgctccaaatgatgctgacggc
actgcggttaaagctgtcgcctgtggagagcaacacacaattttcctgacaaaagaccgc
aaaatgtggagtgttggaagcaatgtcgacggacagctgggacgaggaaaacggagtgag
ggctcgttttccatttatcccgtttcgttgacgagtggagttggcattgtacagatcgcc
gccggccgagctcacagtcttgcagtggccgatgatggccgagtcttcgcatggggctcc
aatgaacacggacaactgggaatggagaacacaatcacttggcaagagatgccaaaacgg
atcaatcaactcaacgaagtggttcaagtggcttctggatccgatcattgcatcgcattg
actgaagatggtcgtgtgtacgtatggggagaacaagccgatggacggtgcattcatcat
ccagaactcgtcgaacatctcaatgcgattccaatcgttcgcgtcgaagccggagctcga
cactgtgtggccatttcggcgtctggagcagtcttcacatggggtcagaacaattccgga
gagttgggaatggacgattttaggcctcaaacctcagttcaccatgtcacccaaatggat
ggtttgggagttgtcgaagcggcgtgcggtgacaatcacacaattcttctgacccattgt
ggacggaccttctcgtttggttccgacgctcttggacagtgcggattcggtaaaaaactc
gaaaaacgtcccaaccccacagccgtctccgatctaatcggctcccatgtcacccggatc
gccgcaggagcatgccatactatcgccatcatccgcggatctccatatccatttggactg
aattccagtggacaactcggaaacgggaagattatgactcagtcgacaccacggaaaact
gacgatttggatcatgtgacagcggtttttgcaggatatcatcagacttttttcatcaga
tccgcagggtctattgagcaaaacgaaattgtgggaccaagctgcccagtaaaaatgcca
tccaaaatcgatagagagatctttgaaaaagcactgcgatctggagaaaagttggatttg
atggcactcgtcgaatcggtgttctcctcgttgagcagtatcaacaactcgttccttttc
caagacgaacggagattcaatgtgggaatcgatcgatcgcatggtatcgatttggatcaa
gtcatggagacattcatgcttttcgatgagttggcttcgaagaaactgttctcggatttg
atcgctgactctctatccattgcctatgcttcctggaattccaaagtgtcctgtgtcgag
ggtctccgcctcttcttcatccttccctggctcccagtattcactgaaaatgtcacactg
gataccattttcaaagtacatactccattcattgaagcattgtatagtgtcagtgagagc
atgcagaagacgttgggaaactggtggagcaaactctcaacccgtcacttccgtcgccag
gttatcgtgtataagcgagcggttgaaaccattcttcgtgctgggaaagggccaagcaag
gcgagacaattcctgttgacgcttcagagattgttcttgattaatcagaatttccacatc
gtccctttggagacattctatatagaagacctcggacagattcataacataaaattggaa
tattacaacatggtcactaaacaacagccattcaaagatgaatcggattactggacgcat
tatccattcctgctgaatggagctgccaagggtgaagttctctttgtggaggctggattg
attcaggcgatgcacgcccaatccgccatgattgcttctggaggcctaatcgaaggtgtc
acaatgcaacactgtgatctaactgtccgtcgagacttcatcgtatccgatacaatgcac
aaattggctggattcagtgaaatcgatgtgagaaaacctctaaaagtgacgatcgtcgga
gaagaagccgatgatgcaggaggtgtccggaaggagtttttcctgattgtgatgagaaaa
atcttgcaaccagagtatggaatgttcacggagaatgaggagtccagattggtttggttc
agtggaatgcctgctgaattttgtgaaagggaacagttcagacagttgggaagacttgtg
ggattggctgtttataataatgtcattgtgccgttcccgttcccattggcgctgtataag
tacctcctggacattgagccaacactcgaagacctctgtgagctctcacccaccgaagga
cgtggtcttcaatcgcttctggattatgaagaagacgatgttgaagacgtcttctctcta
acattttccatcactttcagcatttttggagaaatcaaaactgtggaattgatacccggt
ggagatgagaaaccagtcaccaaagagaaccgagaggaatatgtgaagctctacgtctcg
catcgtctggaactgggatacaacaatgagattgcgaatcaagcgagagagttccggcgt
ggattctcggatgctctgcatagtcgagtgctgaaattcttccagccaagagagttgaag
gagcaaattagtggaaccgagaattacgattggaatgagtttagagaactggtgacctac
aaaggcgaatacacggcttcccacccggcagtcaagaccttctggaaggccttcttcgct
ttggacgaagacgaaaagaagaaattccttcaatttttgagtggatccacccggattcca
gttggaggaatgaaggacttgcatccgttcatccaaccgacagctccagaaactctcccc
gtcgcccatacatgcttcaatcttctggacctccccaacatctcagatgacgtggaaatg
ctccgacgtcttcggatctcgattgagcacactgagggattcacacttgtttaa
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integrated database retrieval system
