Caenorhabditis briggsae (nematode): CBG_16521
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Entry
CBG_16521 CDS
T01054
Name
(RefSeq) Protein CBG16521
KO
K14400
pre-mRNA cleavage complex 2 protein Pcf11
Organism
cbr
Caenorhabditis briggsae (nematode)
Pathway
cbr03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
cbr00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
CBG_16521
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
cbr03021
]
CBG_16521
03019 Messenger RNA biogenesis [BR:
cbr03019
]
CBG_16521
Transcription machinery [BR:
cbr03021
]
Eukaryotic type
RNA polymerase II system
Other transcription-related factors
Transcription termination factor
CBG_16521
Messenger RNA biogenesis [BR:
cbr03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Pre-mRNA cleavage factor IIm (CFIIm)
CBG_16521
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
CID
DUF4258
Motif
Other DBs
NCBI-GeneID:
8583841
NCBI-ProteinID:
XP_045095988
LinkDB
All DBs
Position
III:complement(7515678..7519066)
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AA seq
868 aa
AA seq
DB search
MDPADIEGAARDYRESLAELKNNNKTQINFLTILADDFKGAAKEIVDVIETHLTTCAPSQ
KLPVMYVCDSILKNVAKPNDYHALFARKIINMFEHVFRQVNFILESGFLFLGEEGTRSSL
YRLRVTWATTGAFMPSKLYALDMKINRLDQAWPISNPNTGRALRTDPQVMVNAPSTSRPS
VAPTSSGAPIPPARTVAPVAPPTRVFVNPRFIEAAGASAIAAQQTTSTTKKTSEKTRCKT
VMLFQKASSSVKEKPIKKEPKERKQDPLDKLLPSTASGSSKSAAPPGSKRKSIPAEHPSA
PIRKKNPQPDLDEDLRSINLSNKNNVSQHARDQDFRPKALAPTSVIGSHAFAPAVSRTVV
PPTVPPTHFIPLPPQPAHPMPPFSLATQPSTPQTIVSNGMNGGPYHHHSPPQDPAPMATM
AQVAPMAPPVQMASSQQSKNVYSSEQTKLDVPANNRIFVDGKAYEVMFVDDTAVIERGGA
PHRIYFAGPKRDLLIDGIAHTLEFDKATPVEILGSTHIVKFGAPSRELYIGGHPFKGQFG
GPPIVATINGRRHEIRLTGSAPEVRIEPEPSYHLTHFLHKMREEKKIEIASEKPEKKEDW
LSYLKSLQKSGILPPVKNPSPRQQVSPPPATSNHNYSNGARGGRQNQRGPGGQSRWGAPE
QKKPILATPPTPTGNGIEKRNSPPTTITDYNIRVLQVRYDSVVDALITKRSDSCTICGMR
LDDSQGKSKEWQDHMDWHVKQNLARHGSNSSAAAIPYRQWYPSTSTWLTPRASEQPSDQN
AEKQGSPLPGVDSAGVKTKECSVCGEKFDEYYDDDEEMWRLRDTVSHNGRIVHAACASDA
DTHFFDNSTYFADAEIKKEEPYEDGVYA
NT seq
2607 nt
NT seq
+upstream
nt +downstream
nt
atggatccagccgatatcgaaggagccgcgcgagattatcgcgaatcgttggcagagttg
aaaaataacaacaaaactcaaatcaattttctcacaatcttggccgacgacttcaaaggg
gcagccaaggaaatcgttgatgtcattgaaacgcatctgactacttgtgcaccgtcccag
aagttgcctgtaatgtatgtctgtgattctattctcaagaacgttgcaaaaccaaatgac
taccacgccctgttcgcaaggaaaatcatcaacatgtttgagcacgtctttcgacaggta
aatttcattcttgaatcgggtttcctgtttctcggcgaagagggaactcgttcatcgtta
tacagactccgtgtcacctgggcaactactggagcattcatgccttcgaaactgtatgca
ttggacatgaagatcaacagactggatcaagcatggccgatttcgaatccaaatacagga
cgagcacttcgcaccgatccgcaagtcatggttaatgctccatctacttcgagaccatca
gttgcacctaccagctctggtgccccgatcccgcctgctcgcactgttgctcctgtcgca
ccaccaactcgtgtgttcgtgaatccaaggttcatcgaagctgctggtgcttcagccatt
gctgctcagcagacgacgtcgacgacgaagaaaacctctgagaaaacgaggtgtaaaacc
gtgatgttatttcagaaggcatcgtcgtcagtcaaggagaagccgatcaagaaagaaccc
aaagagcgtaagcaagatcctctcgataaacttcttccctctacggccagcggatcttca
aaatcagctgctccgccaggatccaagaggaagtcgatacctgctgaacatccgagtgct
ccgattcgaaagaagaatccacagccagatcttgatgaagatcttcgatccataaacttg
tccaacaaaaataatgtttcgcaacatgcacgtgaccaagacttcagaccaaaggctcta
gcaccaacctccgttatcggatcccatgcgtttgccccagcagtgtcccgaacagtagtt
ccaccgactgtcccacccactcatttcattccacttccaccgcaaccagctcatccaatg
cctccatttagtctggctactcagccatcgactccccaaacaattgtttctaatggaatg
aatggaggcccatatcatcatcattcacctccccaagatccagctccaatggctacaatg
gctcaggttgcaccaatggctcctccagttcaaatggcatcgtcccaacaatcgaaaaat
gtatattcatctgaacaaacgaaacttgatgtgcctgccaacaatcgtatcttcgtcgac
ggaaaagcctacgaagttatgttcgttgatgatactgcagtcatcgagcgtggcggtgct
ccacacagaatctattttgcgggaccgaaacgcgacttgctcattgacggaatcgcacat
actttggagtttgacaaggccactccagtggagattctcggttcaactcatatcgtcaag
ttcggagctccatctcgcgaactctacattggaggtcatccattcaaaggacaattcggt
ggtccaccaattgttgccacaatcaacggacgtcgtcatgagattagattaaccggaagc
gcgccagaagtccgtattgaacctgagccatcatatcatctcactcatttcttgcataag
atgcgagaagagaaaaagattgagattgcctcggagaaaccggagaagaaagaagactgg
ctttcctatctcaaaagtcttcaaaagtctggaatactaccaccagtgaagaatccatca
ccacgtcagcaggtatcaccacctccagcaacatccaatcacaattatagtaatggagcc
agaggaggccgtcaaaatcaacgcggtccaggtggtcaatcgcgatggggagcaccagag
caaaagaagccaattcttgctactccaccaacgccaactggcaatggtatcgagaagaga
aattcgccaccaactacaatcactgattataacattcgagtattacaagttcgatatgat
tcggttgttgacgcattgatcacaaaaagatcagattcgtgcacaatctgcggcatgcgg
ttggacgattcacaaggaaagtcaaaagaatggcaagatcatatggattggcatgtcaag
caaaacttggctcgtcatggttctaattcgtctgctgctgctattccataccgtcaatgg
tatccgtctacaagcacgtggctcactccccgagcatctgagcaaccatccgatcagaac
gctgagaagcagggttctccacttcccggagttgattccgctggtgtcaaaacaaaagaa
tgctcggtatgcggagagaagttcgatgagtactatgacgatgatgaggagatgtggaga
ttaagagataccgtcagccacaatggaaggattgtacacgctgcatgtgcgtcagatgca
gacacccactttttcgacaattctacgtactttgccgatgctgaaataaagaaagaggaa
ccatatgaggacggcgtatacgcttga
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