Caenorhabditis briggsae (nematode): CBG_16678
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Entry
CBG_16678 CDS
T01054
Name
(RefSeq) Protein CBG16678
KO
K12811
ATP-dependent RNA helicase DDX46/PRP5 [EC:
5.6.2.7
]
Organism
cbr
Caenorhabditis briggsae (nematode)
Pathway
cbr03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
cbr00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
CBG_16678
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
cbr03041
]
CBG_16678
Enzymes [BR:
cbr01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
CBG_16678
Spliceosome [BR:
cbr03041
]
Complex A
U2 snRNP components
U2 related factors
CBG_16678
Complex B
CBG_16678
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
Motif
Other DBs
NCBI-GeneID:
8583965
NCBI-ProteinID:
XP_045096034
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All DBs
Position
III:8165981..8172863
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AA seq
1000 aa
AA seq
DB search
MGRDHKEHKRHRSRSKERKRSRSRSPRRDHHERRRRDRSRDRDYDRRDRGKQRDADRQKQ
KEKEKEASKSAVFEMEESSNAIDPSSILARGTGFLNRTKKGRKLEKISDVNDVIEMKQFD
LEKEMERRRRNVELWRAKKKKEELDQASEQQEENDKKSKKKAWNLEDEDDEDEFDLGSNG
SKSVENPEETTKKPEKTEKMEVDDDDEDPLEAYMAQISSQNAKKSKNPVNQISGIVTIIQ
EEKPEKEKGQVLENEDNMDMVIDDFDIETAAASLCHKGRMLAQTDHSKVYYRKFKKNFYI
ETAEIQKMTKAEVKAYREELDSITVKGIDCPKPIKTFAQCGLNLKMMNVLKKLDYSKPTS
IQAQAIPAIMSGRDVIGIAKTGSGKTLAFLLPMFRHILDQPELEEGDGPIAVILAPTREL
AMQTYKEANKFAKVLGLRVACTYGGVGISEQIADLKRGAEIVVCTPGRMIDVLAANSGKV
TNLRRVTYLVLDEADRMFDKGFEPQIMKVVNNIRPDKQTVLFSATFPRHMEALARKVLDK
PVEILVGGKSVVCSDVTQNAVICEEHQKLLKLLELLGMYYEQGCSIVFVDKQEKADDIVD
QLMKTGYNSVAPLHGGIDQHDRDSSIADFKTGVIKVLVATSVAARGLDVKNLILVVNYDC
PNHYEDYVHRVGRTGRAGRKGYAYTFVLPEHQEKMAGEICRAFETAGVKPPADLKAMFER
FKKEMEAEGKQVHLGGKGFEGHGYKYDEGEAEADANKKKMARLVHGMEAGGEDEDDLDEQ
LSSMIKTKRRVVHGKPTSEKPTTSGNSKSDREAEKRKDAAKLKAEEISSRLKTAQNTIQP
IEKTATQLTAEAVIRGKDVAPVQISTAMLAKEKAQRLNEKLNYLGGEAAPTEKQEEAWEY
FEEEWDINDFPQQVRYKICSRESVGHVAELAEVGISVRGVHVPPGKEPKAGERRLHLLLE
ARSERNLKAAKEEIIRIMKEAFRQLTAQIQRGGTQARYKV
NT seq
3003 nt
NT seq
+upstream
nt +downstream
nt
atgggccgcgatcacaaagagcacaagcgtcatcgatcccgttccaaagagcggaaaagg
agccgaagccgttctccacgtcgggaccaccatgaaagacggcgtcgagatcgctcccgg
gaccgggattacgataggagagatcgtggtaaacagagagacgcagacaggcagaagcag
aaggaaaaagagaaggaagcaagcaaatcagcggtttttgagatggaagagagtagtaat
gcgatagacccgagttcgatcctcgctcgaggcaccggatttttgaataggacgaaaaaa
ggccgaaaattggaaaaaatttcagatgtcaacgacgtcatcgaaatgaagcaattcgat
ttggagaaggaaatggagcgtcgccggcggaacgtggagctttggagggccaaaaagaag
aaggaagagctggatcaggcgtctgaacaacaggaagaaaatgataaaaagtccaaaaag
aaggcgtggaatctagaagacgaggatgacgaagatgagtttgatttaggctcaaatggc
tcaaaatcggttgaaaacccagaagaaacgacgaaaaagccggaaaaaacagaaaaaatg
gaggtagacgacgacgatgaggaccctctggaagcctatatggctcaaatttcgtcccag
aacgcgaaaaaatcgaaaaatccagttaatcagatatcaggaatcgtcactatcatccaa
gaagaaaaaccggagaaagagaagggacaagtgctggaaaacgaggataatatggatatg
gtcattgatgatttcgatattgaaactgctgctgcttcgttgtgtcataagggacggatg
ttggcacaaaccgatcattcaaaagtctattatcggaaattcaagaaaaatttttatatt
gagactgccgaaatccaaaaaatgacaaaagccgaagtgaaagcgtaccgcgaggagctg
gacagcatcaccgtcaaaggaatcgattgcccaaaaccaatcaaaacgttcgctcaatgt
ggtctaaatctcaaaatgatgaatgtcttgaaaaagctggattattcaaagcccacctcg
attcaagctcaagctatcccagcgattatgtcaggaagagatgtgattggaattgcaaaa
accggttctggaaaaacgctcgccttccttctaccaatgttccgtcacattcttgatcaa
cctgagcttgaggagggcgatggacccatcgcagtgattctagcgccaaccagagagctg
gctatgcaaacgtacaaggaggctaacaagttcgcaaaggttctgggtctccgtgtagct
tgtacctacggtggtgtgggaatctccgaacagattgctgatttgaaacgtggcgccgag
attgtggtttgtacgcctggccgaatgatcgatgtgctggctgcgaatagtgggaaagtg
accaatttgaggagagtgacgtatttggtactggatgaagccgatcgaatgtttgataag
ggttttgagccacagatcatgaaagtggtcaacaacattcgccccgacaagcaaaccgtt
ctcttctccgccacattccctcgtcacatggaagctttggcacggaaagttctcgataaa
cccgtcgaaattctcgtcggcggaaaatcagtcgtctgttcggatgtaacccaaaacgcc
gtgatctgcgaagagcatcagaagcttctgaagctcctagagcttctcggaatgtactat
gagcaaggatgctcaattgtgttcgttgataagcaggagaaggccgatgatattgttgac
cagctcatgaagaccggatataactcagtggcccctctgcatggaggaattgatcaacac
gatcgagattcatcgattgccgacttcaagacaggagtgatcaaagtgctagtcgccaca
tcagtagccgccagaggtctcgacgttaagaatctgattctagtagtcaattacgattgt
ccgaatcactacgaagattatgtgcatcgtgttggacggactggaagagctggacggaag
ggatacgcctacaccttcgtactacccgaacatcaggaaaaaatggcaggagagatctgc
agagctttcgaaactgctggagttaagccacctgcggatctaaaagccatgtttgagagg
tttaaaaaggaaatggaggctgagggaaagcaggtgcacttgggagggaaaggattcgaa
ggacacggatacaaatacgatgagggagaggctgaagcggatgcgaataagaagaaaatg
gcgagattggtgcacggaatggaagctggcggtgaggacgaagacgatctggatgagcaa
ttatcgtcaatgatcaaaacaaaacgacgagtcgtgcacggaaaaccgacatcagagaaa
ccgacgacgtctggaaattcgaaatccgatcgagaagcggagaagagaaaggatgcggcg
aagctgaaggccgaagaaattagttctcgtctaaaaacggctcaaaacacgattcagcca
atcgaaaaaacggctacccagttgacggcagaagctgtgattcgtggaaaagacgtggcg
ccggttcagattagtacggctatgctggcaaaggagaaggcgcagaggttaaatgagaag
ctcaattatttgggaggagaagcggctccaacagagaagcaagaagaagcgtgggaatat
ttcgaagaggaatgggacatcaacgatttcccccaacaagtccgctacaaaatttgctcg
agagaatcggtcggacacgtggccgaactcgccgaagtcggaatttcggtccgaggagtg
cacgtaccgcctggaaaggagccgaaagctggagagcggcgtctgcatttattgttggag
gcgagaagtgagaggaatttgaaagcggccaaagaggagattattcgaattatgaaggag
gcgtttagacaattgaccgcccaaatccaacgaggaggcacacaggccagatacaaagtc
tga
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integrated database retrieval system
