Caenorhabditis briggsae (nematode): CBG_18689
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Entry
CBG_18689 CDS
T01054
Symbol
Cbr-hda-3
Name
(RefSeq) Protein CBR-HDA-3
KO
K06067
histone deacetylase 1/2 [EC:
3.5.1.98
]
Organism
cbr
Caenorhabditis briggsae (nematode)
Pathway
cbr03082
ATP-dependent chromatin remodeling
cbr03083
Polycomb repressive complex
cbr04213
Longevity regulating pathway - multiple species
cbr04330
Notch signaling pathway
cbr04350
TGF-beta signaling pathway
Brite
KEGG Orthology (KO) [BR:
cbr00001
]
09120 Genetic Information Processing
09126 Chromosome
03082 ATP-dependent chromatin remodeling
CBG_18689 (Cbr-hda-3)
03083 Polycomb repressive complex
CBG_18689 (Cbr-hda-3)
09130 Environmental Information Processing
09132 Signal transduction
04330 Notch signaling pathway
CBG_18689 (Cbr-hda-3)
04350 TGF-beta signaling pathway
CBG_18689 (Cbr-hda-3)
09150 Organismal Systems
09149 Aging
04213 Longevity regulating pathway - multiple species
CBG_18689 (Cbr-hda-3)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03036 Chromosome and associated proteins [BR:
cbr03036
]
CBG_18689 (Cbr-hda-3)
Enzymes [BR:
cbr01000
]
3. Hydrolases
3.5 Acting on carbon-nitrogen bonds, other than peptide bonds
3.5.1 In linear amides
3.5.1.98 histone deacetylase
CBG_18689 (Cbr-hda-3)
Chromosome and associated proteins [BR:
cbr03036
]
Eukaryotic type
Histone modification proteins
HDACs (histone deacetylases)
Class I HDACs
CBG_18689 (Cbr-hda-3)
HDAC complexes
Sin3A-HDAC complex
CBG_18689 (Cbr-hda-3)
BRAF-HDAC complex
CBG_18689 (Cbr-hda-3)
REST complex
CBG_18689 (Cbr-hda-3)
SHIP complex
CBG_18689 (Cbr-hda-3)
MiDAC complex
CBG_18689 (Cbr-hda-3)
Polycomb repressive complex (PRC) and associated proteins
Noncanonical PRC1 (PRC1.6)
CBG_18689 (Cbr-hda-3)
Heterochromatin formation proteins
Other heterochromatin formation proteins
CBG_18689 (Cbr-hda-3)
Chromatin remodeling factors
NuRD complex
CBG_18689 (Cbr-hda-3)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Hist_deacetyl
Phage_int_SAM_3
Motif
Other DBs
NCBI-GeneID:
8582522
NCBI-ProteinID:
XP_002640527
UniProt:
A8XTW7
LinkDB
All DBs
Position
I:complement(11894299..11899465)
Genome browser
AA seq
462 aa
AA seq
DB search
MTNKLLHSKSRVSYYYDGDFGNFYYGQGHPMKPHRVRMTHSLIVNYGLYRKLTVMRPAPA
SFSEITRYHSDDYVNFLRSVRSDNIQSLADQMARFSVGEDCPVFDGLYEFCQLSCGGSLA
AAAKLNRKESDIAINWMGGLHHAKKSEASGFCYSNDIVLAILELLKEHKRVLYIDIDVHH
GDGVEEAFYTTDRVMTVSFHKHGEYFPGTGDLKDVGAGKGKYYALNVPLRDGVDDFTYER
IFRTVMGEVMARFQPEAVVLQCGADSLAGDRLGVFNLTTYGHGNCVEYMKSFNVPLLLVG
GGGYTIRNVSRCWLYETSLALDLDVPNELPFNDYFDYFIPDYKLHIKPLPHLTNYNTQEF
IDQTIVSLLDNLKLMTHVPSVQMQPLPTTSDRIVKTFDENLRRDHQDDDVRNSQLDQDVG
IEHASEFYDEQEATRNTHKRQRFESQTEASEDAKKTRVDGEE
NT seq
1389 nt
NT seq
+upstream
nt +downstream
nt
atgacgaacaaactactgcattcaaagtcccgcgtttcctattattacgatggggatttc
ggaaatttctattatggccaagggcatccgatgaagccccatcgagttcggatgacacac
agtttgattgtaaattacggattgtatcggaagctcactgtaatgcgtcccgcgcctgct
tccttctccgaaatcactcgttatcactctgacgactacgtaaacttcctccgcagcgtc
agatctgataatatccaatcgctggctgaccaaatggctcgtttctcagtcggagaggat
tgtcctgtattcgacggtctctatgaattctgccaactgtcttgtggtggatctctggcc
gctgcagcgaagctaaatcgaaaagaatcagacatcgccattaactggatgggtggtctt
catcatgcgaaaaaatccgaggcttctggattctgctactccaatgacattgttttggcg
attctggagctactgaaagagcacaaaagagtactgtacattgatattgatgttcatcac
ggggatggtgtcgaagaggcgttttatacgacggatcgagtgatgacggtgtcatttcac
aagcatggagagtattttccaggcactggagatttgaaagacgtcggcgctggaaaaggg
aaatactacgcgctgaacgtccccctccgtgacggtgtcgacgatttcacctacgaacga
atcttccggacagtcatgggagaagtcatggccagattccaaccagaagccgtcgtcctt
caatgtggagctgattcactcgccggagatcgtttgggagtgttcaatttgactacctat
ggacatggaaactgtgtggaatacatgaagtcgttcaacgtcccgttgcttttggttgga
ggcggtggatacacgattcgcaatgtttcgaggtgctggttgtatgagacgtcgctggcg
ctggatttggatgtcccaaatgaactccccttcaacgactactttgactacttcatccca
gactacaaactacacataaagccgctcccacatctcaccaactacaacacccaagagttt
atcgatcaaactatcgtgtctcttctagacaatctgaaattaatgacacatgtcccgtca
gtgcaaatgcagccacttccaacgacttctgatagaattgtgaagacgttcgatgagaat
ctgagaagagaccatcaggatgacgatgtccgaaactcgcagctagatcaagatgtcgga
atcgagcacgcttctgaattctacgacgagcaggaagccaccagaaacacgcataaacgc
caacgattcgagagccaaacagaggcatcagaagacgccaaaaagacacgtgtcgatgga
gaggaataa
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