KEGG   Caenorhabditis briggsae (nematode): CBG_19371
Entry
CBG_19371         CDS       T01054                                 
Name
(RefSeq) Protein CBG19371
  KO
K14328  regulator of nonsense transcripts 3
Organism
cbr  Caenorhabditis briggsae (nematode)
Pathway
cbr03013  Nucleocytoplasmic transport
cbr03015  mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:cbr00001]
 09120 Genetic Information Processing
  09122 Translation
   03013 Nucleocytoplasmic transport
    CBG_19371
   03015 mRNA surveillance pathway
    CBG_19371
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:cbr03019]
    CBG_19371
Messenger RNA biogenesis [BR:cbr03019]
 Eukaryotic type
  mRNA surveillance and transport factors
   Surveillance factors
    Surveillance complex
     CBG_19371
   mRNA cycle factors
    P-body specific factors
     CBG_19371
SSDB
Motif
Pfam: Smg4_UPF3 CXXC_Zn-b_euk
Other DBs
NCBI-GeneID: 8579622
NCBI-ProteinID: XP_045096761
LinkDB
Position
V:complement(13809483..13811814)
AA seq 462 aa
MSSRSEKRESPDQVKVALRRLPKYMTEKEVLEQISPLPEEVIDTYFLPANLAFDHAAYAT
LILLFSEYCDSMMDFERRFDGYIFVDSRGNDSTAVVEASVNQNFAKCDRPRIKEDSRVGA
ILTDTYYLEFCKKLEKEKSIPIMTLEQQIRKLNQPEDIRTQIDHLETPLVKYFLEKETGR
RREGEARKQRRDFRKAEKQKNVLDVLMKPTVAASTASTSGGPPRKENKEMTDREREKLEK
IEAKKKERNALRKQRFLEDRKKKQQEEREGRGDAAENPKPPREHKKKERPGRAPRPSPAK
TLSEQQGEDWIKKLTDPKAAIKKKHDISVSTKMKQCDGTRSQPAPPTPSTRSEMLEVPGS
RGEANLVEKCKLSILPDLFKSYNIEKNEEWQQIAIFDCRGIEPFDFDPRDDWIANSVDTG
KAFREIDLSEKEWVDFDDKAMEAVEIGEMSIQFTTVRDPKKK
NT seq 1389 nt   +upstreamnt  +downstreamnt
atgagttctcgctctgaaaaacgcgaatcaccggaccaagtgaaagttgcgcttcgccgt
ctgccaaagtatatgacggaaaaggaggttcttgaacaaattagtcctctaccagaagaa
gtcatcgatacatactttcttccagccaatctcgcattcgatcatgctgcctatgcaacg
ctaatccttctcttctccgagtactgtgactcaatgatggactttgagcgtcgttttgac
ggctacatctttgtcgattcccgtggaaatgattcgactgcagttgtcgaggcaagtgtc
aaccagaactttgccaagtgtgatcgcccacgaatcaaggaagactctcgcgttggtgcc
attctcactgatacctactatttggagttttgtaaaaaattggaaaaggagaagtcgatt
ccgattatgactctggagcaacaaattagaaagctcaatcaaccggaagacatcagaact
caaatcgaccatctggagaccccgcttgtgaagtacttcctagaaaaagaaaccggcaga
cgtcgcgaaggcgaagctcgcaagcagcgtcgtgatttcaggaaggcagaaaagcagaaa
aacgttctggatgttctgatgaaaccaactgttgctgcttctactgcgtctacatcaggt
ggtccgccgagaaaagagaataaagaaatgactgatagggaaagagaaaaattggagaag
attgaagcgaaaaagaaagaacgaaatgcacttcggaagcaacgattcctcgaagacaga
aagaaaaaacaacaagaagagcgggaaggtcgaggggatgctgctgagaatccaaagcca
cccagagaacataagaaaaaggagcgtccaggtagagcaccacgtccatctccagcgaag
actctcagtgagcaacaaggcgaggattggatcaaaaaactcactgacccaaaagcagca
atcaagaagaaacacgacatttcagtctccaccaaaatgaaacagtgcgatggcacacga
tcccaaccagcaccaccaactccatctactcgttctgaaatgctcgaagttcccggaagt
cgtggcgaagcgaatcttgtggagaagtgcaagctgtcaatccttccggatctgttcaag
agctacaacattgagaaaaacgaggaatggcagcagattgctatcttcgattgccgtgga
attgagccatttgatttcgatccaagggatgattggattgccaatagtgtcgacactgga
aaagcgttccgtgaaattgatctttccgaaaaggaatgggtcgactttgatgacaaagcg
atggaggctgttgaaatcggagaaatgtcgattcagttcaccactgttcgtgatccaaag
aagaagtga

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