Corvus brachyrhynchos (American crow): 103625568
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Entry
103625568 CDS
T08418
Symbol
UPF1
Name
(RefSeq) regulator of nonsense transcripts 1
KO
K14326
regulator of nonsense transcripts 1 [EC:
5.6.2.5
5.6.2.3
]
Organism
cbrc
Corvus brachyrhynchos (American crow)
Pathway
cbrc03013
Nucleocytoplasmic transport
cbrc03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
cbrc00001
]
09120 Genetic Information Processing
09122 Translation
03013 Nucleocytoplasmic transport
103625568 (UPF1)
03015 mRNA surveillance pathway
103625568 (UPF1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
cbrc03019
]
103625568 (UPF1)
Enzymes [BR:
cbrc01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.3 DNA 5'-3' helicase
103625568 (UPF1)
5.6.2.5 RNA 5'-3' helicase
103625568 (UPF1)
Messenger RNA biogenesis [BR:
cbrc03019
]
Eukaryotic type
mRNA surveillance and transport factors
Surveillance factors
Surveillance complex
103625568 (UPF1)
mRNA cycle factors
Common to processing body (P body) and stress granule
103625568 (UPF1)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
UPF1_Zn_bind
AAA_12
AAA_11
UPF1_1B_dom
AAA_30
AAA_19
ResIII
SLFN-g3_helicase
ATPase
nSTAND3
DEAD
Helicase_RecD
AAA_16
UvrD-helicase
SRP54
UvrD_C_2
AAA_22
Motif
Other DBs
NCBI-GeneID:
103625568
NCBI-ProteinID:
XP_017583007
LinkDB
All DBs
Position
Unknown
AA seq
1078 aa
AA seq
DB search
CFSSWQHFSVEIFKWHTRFWVEEEFGVYFGCAPPFQVNGPDGILQNGAVDENVAKTSQLL
AELNFEEDEEDTYYTKDLPVHACSYCGIHDPACVVYCNTSKKWFCNGRGNTSGSHIVNHL
VRAKCKEVTLHKDGPLGETVLECYNCGCRNVFLLGFIPAKADSVVVLLCRQPCASQSSLK
DINWDSSQWQPLIQDRCFLSWLVKIPSEQEQLRARQITAQQINKLEELWKENPSATLEDL
EKPGVDEEPQHVLLRYEDAYQYQNIFGPLVKLEADYDKKLKESQTQDNITVRWDLGLNKK
RIAYFTLPKTDSDMRLMQGDEICLRYKGDLAPLWKGIGHVIKVPDNYGDEIAIELRSSVG
APVEVTHNFQVDFVWKSTSFDRMQSALKTFAVDETSVSGYIYHKLLGHEVEDVIIKCQLP
KRFTAQGLPDLNHSQVYAVKTVLQRPLSLIQGPPGTGKTVTSATIVYHLARQGNGPVLVC
APSNIAVDQLTEKIHQTGLKVVRLCAKSREAIDSPVSFLALHNQIRNMDSMPELQKLQQL
KDETGELSSADEKRYRALKRTAERELLMNADVICCTCVGAGDPRLAKMQFRSILIDESTQ
ATEPECMVPVVLGAKQLILVGDHCQLGPVVMCKKAAKAGLSQSLFERLVVLGIRPIRLQV
QYRMHPALSAFPSNIFYEGSLQNGVTAADRVKKGFDFQWPQPDKPMFFYVTQGQEEIASS
GTSYLNRTEAANVEKITTKLLKAGAKPDQIGIITPYEGQRSYLVQYMQFSGSLHTKLYQE
VEIASVDAFQGREKDFIILSCVRANEHQGIGFLNDPRRLNVALTRARYGVIIVGNPKALS
KQPLWNHLLNYYKEQKVLVEGPLNNLRESLMQFSKPRKLVNTINPGARFMTTAMYDAREA
IIPGSVYDRSSQGRPSNMYFQTHDQIGMISAGPSHVTAMNIPIPFNLVMPPMPPPGYFGQ
ANGPAAGRGAPKGKTGRGGRQKNRFGIPGTSQSNLPNSQASQDVVSQPFSQGPLTQGYIS
MSQPSQMSQPGLSQPELSQDSYLGDEFKSQIDVALSQDSTYQGERAYQHGGVTGLSQY
NT seq
3237 nt
NT seq
+upstream
nt +downstream
nt
tgtttcagctcttggcagcatttttctgtggagatttttaaatggcacacaagattttgg
gttgaagaggagtttggggtttattttgggtgtgcacctccattccaggtgaatggtcct
gatggaatcctgcagaatggagctgtggatgagaacgtggccaagaccagccagctcctg
gcagagctcaactttgaggaggatgaagaggacacttattacaccaaggatctccctgtg
cacgcctgcagttactgtgggatccatgaccctgcctgtgtggtttactgcaacaccagc
aagaaatggttctgtaacgggcgtggaaacacatctggcagccacattgtgaatcacctg
gtgagagccaagtgcaaagaggtgactctgcacaaggatggacctctgggagagactgtc
ctggaatgttacaactgtggctgtcggaacgttttcctcctcggcttcatcccagccaag
gctgactctgtggtggttctgctgtgcaggcagccatgtgccagccagagcagtttaaag
gacatcaactgggacagttcccagtggcagcccctgatccaggaccgctgcttcctttcc
tggctggtgaagattccgtcggagcaggagcagctcagggcccggcagatcacagcccag
cagatcaacaaactggaagagctctggaaggaaaatccatctgcaaccctcgaggacttg
gaaaaacctggtgttgatgaggaaccccagcatgtcctgcttagatatgaagatgcttat
caataccaaaatatatttggtcctctggtcaagcttgaagcagattatgacaagaaactc
aaggaatctcagacccaagataacatcacagtcaggtgggacctgggcttgaacaagaag
agaattgcttatttcactttgccaaagactgattcagacatgcgcctcatgcaaggagat
gagatctgcctgaggtacaagggagacctggcccccctctggaaaggaattgggcacgtt
atcaaagttcctgataattatggtgatgagatagccatcgagctgaggagcagcgtggga
gctcccgtggaagtcactcacaacttccaggtggattttgtgtggaaatcgacttccttt
gacagaatgcagagtgctctgaaaacatttgcagtggatgagacctcggtgtctggctac
atctaccacaagctgctgggccacgaggtggaagatgtcatcatcaaatgccagctgcca
aagcgcttcacagcacagggactccctgatctcaaccactctcaggtttatgctgtcaag
actgtcctgcagcgtcctctgagccttatccagggtccccctggcactgggaagacagtg
acatcagccaccatcgtgtatcacctggccaggcagggcaatgggcctgtgctggtgtgt
gcccccagtaacatcgctgtggatcagctgacggagaagatccaccagactggcctcaaa
gtggttcgtctgtgtgcaaagagccgcgaggccatcgactcacccgtgtccttcctggca
ctgcacaaccagatcaggaacatggacagcatgccagagcttcagaagctgcagcagctc
aaggatgagactggagaactttcctctgctgatgagaagcgttaccgggcgctgaagcgc
acggcagagcgggagctgctcatgaacgctgatgtgatctgctgcacctgtgtgggagct
ggagatcccagactggccaagatgcagttccgctccatcctgattgatgagagcacccag
gccaccgagccggagtgcatggtgcccgtggtgctgggggcaaagcagctgatcctggtg
ggtgaccactgccagctgggccctgtggtgatgtgcaagaaggctgccaaggctgggctg
tcccagtccctgtttgagaggctggtggtgctgggcatccggcccatccggctgcaggtg
cagtaccgcatgcaccccgccctcagcgccttcccctccaacatcttctacgagggatcg
ctccagaacggggtcaccgcagctgacagggtgaagaaaggctttgatttccagtggccc
cagcctgacaaacccatgtttttctacgtgacccagggacaggaggagattgccagctca
ggcacctcttacttaaacaggacggaagctgccaacgtggagaagatcaccacgaagctg
ctcaaagctggggccaaacctgaccagattggcatcatcaccccctacgaggggcagcgc
tcctacctggtgcagtacatgcagttcagtggctccctgcacacaaagctctaccaggaa
gtggaaattgcgagtgtggatgccttccagggcagggagaaggatttcattatcctgtcc
tgtgtgagggccaatgaacaccagggaattgggttcctcaacgaccccaggaggctcaac
gtggccctgacaagagccaggtatggggtgatcatcgttgggaaccccaaagccctgtcc
aagcagcccctctggaatcacctcctgaattactacaaggagcagaaggtgctggtggag
gggcccctgaacaacctccgggagagcctcatgcagttcagcaaaccccgcaagctcgtc
aacaccatcaaccccggtgcccgtttcatgaccactgccatgtatgatgcacgggaggcc
atcatcccaggctctgtctacgaccgcagcagccaagggcgcccatccaacatgtacttc
caaacccacgaccagatcgggatgatcagtgctggccccagccacgtcactgccatgaac
attcccatccccttcaacctcgtgatgcccccgatgcctcccccgggctacttcggccag
gccaacggccctgctgcaggccgtggggctcccaaaggaaagaccggccgtggcgggcgg
cagaaaaaccgatttgggattcctggcacgagccagtccaacctccccaacagccaggcc
agccaggacgtggtgtcccagcctttctcccagggccccctgactcagggctatatctcc
atgagtcagccctcacagatgagtcagcctgggctctcccagccggaattatcccaggac
agttaccttggtgatgagtttaaatcccagattgacgtggcgctgtcacaggactcaact
taccagggggaacgtgcatatcaacatggtggagtgacgggactgtcacagtattag
DBGET
integrated database retrieval system
