Clostridium butyricum: ATN24_14905
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Entry
ATN24_14905 CDS
T04197
Name
(GenBank) ATP-dependent DNA helicase RecQ
KO
K03654
ATP-dependent DNA helicase RecQ [EC:
5.6.2.4
]
Organism
cbut
Clostridium butyricum
Pathway
cbut03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
cbut00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
ATN24_14905
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
cbut03019
]
ATN24_14905
03400 DNA repair and recombination proteins [BR:
cbut03400
]
ATN24_14905
Enzymes [BR:
cbut01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
ATN24_14905
Messenger RNA biogenesis [BR:
cbut03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
ATN24_14905
DNA repair and recombination proteins [BR:
cbut03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
Supressor
ATN24_14905
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RQC
DEAD
Helicase_C
HRDC
RecQ_Zn_bind
ResIII
DUF763
HHH
Motif
Other DBs
NCBI-ProteinID:
ALP91379
LinkDB
All DBs
Position
1:complement(3285311..3287068)
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AA seq
585 aa
AA seq
DB search
MNNREKIFYALKKYYGFDTLRGGQYEIITSILSGRDTFCLMPTGGGKSLCYQIPAILFSG
ITIVISPLISLMKDQVDNLIGSGIKGAYINSTQNLDTIKKILFEASIGEYKIIYVSPERL
ESKIFFDMIKDINISQIAIDEAHCVSQWGHDFRKSYIGISKFCDILKSKPVISAFTATAT
QEVLEDSIKLLGLRNPYTYKGDINRENLRLAVLKEVDKLEELKDIIRENEEKSGIIYCSS
RKEVDMLHHYLKDLGYNVGKYHGGLSDEIKEENQEDFLYERIDIIVATNAFGMGIDKSNI
RYIVHFTIPQNIESYYQEIGRGGRDGELCKCYLFYSESDISRVEYIINKSSAMNRREVQL
RKFQSMIDYCNLNDCYRKFILNYFGNERKLNYCNNCGNCLNDSELKDFTKETQMILSTVF
RTREKFGISVLIDVLRGFKGPKIIQNKLDTVTTYGIMKEYGSGFIKNLIKSLLEEGYVGL
KEGTYSMLKLNARSMNVLKGKENVMFKIIDEDEPVLNEELFDKLKQWRKMKAYKENIRPY
IIFSDATLTAICNTKPKSIQELMEIRGVGEKKIKAYGDEILLLIN
NT seq
1758 nt
NT seq
+upstream
nt +downstream
nt
ttgaataatagagaaaaaattttttatgcactaaaaaaatattatggttttgatacttta
agaggtggacagtatgaaattattacaagtattttaagtggtcgagatactttctgttta
atgccaacaggtggaggaaaatcactatgctatcagattcctgcaatactattttcaggt
attacaattgtaatatcaccattaatatcattaatgaaagaccaagttgataacttaata
ggttcaggaattaaaggagcttatataaatagtactcagaatttggacacaataaaaaaa
atactttttgaagcatctataggagaatataagataatatatgtttcaccagaaagactg
gaatctaaaatattttttgatatgattaaagatattaatatttctcaaatcgctatagat
gaggctcattgtgtatcacaatggggacatgactttagaaagagttatataggaatttca
aaattttgtgatatattaaagagcaagccagttatttctgcattcactgccacggctact
caggaagttcttgaggattctataaaattattaggattaagaaatccttatacatataag
ggtgatataaatagggaaaatttaagacttgctgttttaaaagaagtagataaacttgaa
gaactaaaagatataataagagagaatgaagaaaaatcaggaataatatattgttcatca
agaaaagaagtggatatgcttcaccattatctaaaggatttgggatataatgttggaaaa
tatcatggtggcttaagtgatgagataaaagaagaaaatcaggaagattttttatatgaa
agaatagatataatagtagcgacaaatgcttttggaatgggtatagataaatctaatata
agatatatagtacattttactattccacagaatatagaatcttattatcaggaaattggt
agaggtggtagagatggagaactgtgcaaatgctatttattttattcagaaagtgatata
agcagggtagaatacataataaataaaagttcagcaatgaacagaagagaagttcaactt
agaaaatttcaatctatgattgattactgtaatcttaatgattgttacagaaaatttata
ttaaactattttgggaatgaacgaaaattaaattattgcaataattgtgggaattgttta
aatgattcagaactaaaagattttacaaaagaaactcagatgatattgtctactgtattt
agaactcgtgaaaaatttgggatttcagtgttaattgatgttctaagaggatttaaaggt
cctaaaataatacaaaataaattagatacagttactacttatggaataatgaaagagtat
ggtagtggatttattaaaaatttaataaaaagtcttttagaagaaggatatgttggactt
aaagaaggaacttattctatgcttaaactcaacgcaagatcaatgaatgtattaaaagga
aaagaaaatgttatgtttaaaattattgatgaagatgagccggttttaaatgaggaatta
tttgataaattaaaacagtggagaaaaatgaaagcttataaagagaatataagaccatac
ataattttttcagatgcaactttgactgcaatatgcaatactaagcctaaaagtattcaa
gaattaatggaaatacgtggtgttggcgaaaagaaaataaaagcttatggagatgaaata
ctattattaataaattag
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