Cupriavidus basilensis: RR42_m3043
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Entry
RR42_m3043 CDS
T03642
Name
(GenBank) RNA polymerase sigma factor RpoD
KO
K03086
RNA polymerase primary sigma factor
Organism
cbw
Cupriavidus basilensis
Pathway
cbw02040
Flagellar assembly
Brite
KEGG Orthology (KO) [BR:
cbw00001
]
09140 Cellular Processes
09142 Cell motility
02040 Flagellar assembly
RR42_m3043
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
cbw03021
]
RR42_m3043
Transcription machinery [BR:
cbw03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Sigma factors
RR42_m3043
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Sigma70_ner
Sigma70_r1_1
Sigma70_r3
Sigma70_r2
Sigma70_r4
Sigma70_r1_2
DUF5811
SPO22
Motif
Other DBs
NCBI-ProteinID:
AJG20413
UniProt:
A0A0C4YBV8
LinkDB
All DBs
Position
main:complement(3234764..3237247)
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AA seq
827 aa
AA seq
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MKTTAAAKTAASVKAPAQPVPAKTALSAKAPAASTSTGIHLSENLKPSTSAHESGDSANT
SGKNAASVPVKGKSITVAKQQNTEVESKKAAATSAKTGDAKPGAAEPEATPNATTSAPVA
SERPAAPAVKPEPKKRGRKPKAGAQRDDSTPDDVTEELYEDEIPAAATPTAAPKSDKQKA
RDRKAKEKALLKEFASTQQGTEEELEVRRQKLKALIKLGKSRGYLTYAEINDHLPDDMVD
SETIDTLVATLNDIGIAVYEQAPDAETLLLNDNAPSATSEEEAEEEAEAALSTVDSEFGR
TTDPVRMYMREMGTVELLTREGEIEIAKRIEAGLKDMVMAISACPVTISEILALAERVAS
DEIKIDEFVDGLIDPNAADVPVAPPAPAVVAAAEEDELESDGEESDEDEDEDAGGLAASA
RQLEELKLAALEKFRVIAEQFDKMRRSFEKEGYKSKSYVKAQEAILNELMSIRFTARNVE
RLCDTLRGQVDEVRKLERSILKIVVDKCGMPRADFVARFPGNETNLEWIDTIIKDGKPYS
TIVERNVPAVRELQQKLIDLQMRVVLPLKELKEVNRKMSEGEKRAREAKREMTEANLRLV
ISIAKKYTNRGLQFLDLIQEGNIGLMKAVDKFEYRRGYKFSTYATWWIRQAITRSIADQA
RTIRIPVHMIETINKMNRISRQILQETGNEPDPATLAEKMEMPEDKIRKIMKIAKEPISM
ETPIGDDDDSHLGDFIEDTNTLAPAEAALHGSMRDVVKDVLDSLTPREAKVLRMRFGIEM
STDHTLEEVGKQFDVTRERIRQIEAKALRKLRHPSRSDKLKSFLEGS
NT seq
2484 nt
NT seq
+upstream
nt +downstream
nt
gtgaaaacaacggcggctgcgaagacagctgcgtcagtcaaggcgccagcccagcctgtg
cctgccaagacagctctgagcgccaaggcgcccgcagcgtccacttccaccgggatccac
ctatccgaaaacctgaagccctcgacttcggcacacgagagcggcgatagcgccaataca
agcggcaagaacgccgcatctgtacctgtgaaaggcaagagtattaccgtggcgaaacag
cagaataccgaagtcgagagcaagaaagcggcagcgaccagcgccaagaccggagacgcc
aagccaggcgccgccgagcccgaggccacgccgaatgccacaacttccgcccccgttgca
tccgagcgtcccgccgctccggcagtcaagccggagccgaagaagcgtggccgcaagccc
aaggccggagcgcagcgcgacgacagcacaccagacgacgtgactgaagagctttacgaa
gacgagatccccgcggcagcaacgccgactgccgcgcccaagagcgacaagcaaaaggct
cgcgaccgcaaggccaaggaaaaggccctgctcaaggagttcgcttcgacgcagcagggt
accgaggaagaactggaagtacgccgccagaagctcaaggcgctgatcaagctcggcaag
tcgcgcggctacctgacgtacgcggaaatcaacgatcacctgccggacgacatggtcgat
tcggaaacgatcgacacgctggtcgccacgctcaacgacatcggcattgccgtctacgaa
caagcgccggacgccgaaacgctgctgctcaacgacaacgcaccgtcggccaccagcgag
gaagaagcggaggaagaggctgaggcggcactttcaaccgttgactcggagttcggccgc
accaccgaccccgtgcgcatgtacatgcgcgagatgggcacggtggagctgctgacgcgc
gaaggcgaaattgagatcgctaagcgcatcgaggccggcctgaaagacatggtgatggcg
atctccgcctgcccggtcacgatctccgagatcctggccctggccgagcgcgttgccagc
gatgaaatcaagatcgacgagttcgtcgacggcctgatcgacccgaacgccgcggacgtg
cccgtggccccgccggctccggccgtggtggcggctgccgaggaagacgagctggagtct
gacggcgaggaatcggacgaagacgaggatgaggatgctggcggcctggctgcctcggca
cgccagctcgaggaactgaagctggccgcgctggaaaaattccgcgtgatcgccgagcag
ttcgacaagatgcgccgctcgttcgagaaggaaggctacaagtccaagtcctacgtcaag
gcccaggaagccatcctgaacgagctgatgagcatccgcttcactgcccgcaacgtcgag
cgcctgtgcgacacgctgcgtggtcaggtggacgaggtgcgcaagctcgagcgctccatc
ctgaagatcgtggtggacaagtgtggcatgccgcgtgcggatttcgtcgcccgtttcccg
ggcaatgagaccaacctcgagtggatcgacacgattatcaaagacggcaagccgtacagc
accatcgtcgaacgtaatgtgccggccgtgcgcgagctgcagcaaaagctgatcgacctg
cagatgcgcgtggtgctgccgctcaaggaactcaaggaagtcaaccgcaagatgagcgag
ggcgagaagcgcgcccgcgaagccaagcgcgagatgaccgaggccaacctgcgcctggtc
atctccatcgccaagaagtacaccaaccgcggcctgcagttcctcgacctgatccaggaa
ggcaatatcggcctgatgaaggcggtggacaagttcgaataccgccgcggctacaagttc
tcgacctacgcgacgtggtggatccgccaggccatcacccgctcgatcgccgatcaggcg
cgcaccatccgtatcccggtgcacatgatcgaaacgatcaacaagatgaaccgcatctcg
cgccagatcctgcaggaaaccggcaacgagccggatccggcaacgctggccgagaagatg
gagatgccggaagacaagatccgcaagatcatgaagatcgcgaaggaaccgatctccatg
gaaacgccgatcggtgacgacgacgactcccatcttggcgacttcatcgaagacaccaac
acgctggccccggccgaagcggcgctgcacggctccatgcgcgacgtcgtcaaggacgtg
ctggattcgctcacgccgcgcgaagccaaggtgctgcgcatgcgtttcggcatcgagatg
agcacggaccacacgctggaagaagtcggcaagcagttcgacgtcacccgcgagcggatc
cgccaaatagaagccaaggcattgcgcaagctgcgtcacccgagccgctccgataagcta
aagagtttccttgaaggcagttga
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