Cupriavidus basilensis: RR42_s3417
Help
Entry
RR42_s3417 CDS
T03642
Name
(GenBank) ATP-dependent DNA ligase clustered with Ku protein, LigD
KO
K01971
bifunctional non-homologous end joining protein LigD [EC:
6.5.1.1
]
Organism
cbw
Cupriavidus basilensis
Pathway
cbw03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
cbw00001
]
09120 Genetic Information Processing
09124 Replication and repair
03450 Non-homologous end-joining
RR42_s3417
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
cbw03400
]
RR42_s3417
Enzymes [BR:
cbw01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
RR42_s3417
DNA repair and recombination proteins [BR:
cbw03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
Two-component NHEJ DNA repair complex
RR42_s3417
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LigD_Prim-Pol
LigD_N
DNA_ligase_A_M
DNA_ligase_A_C
DNA_primase_S
RNA_ligase
mRNA_cap_enzyme
Motif
Other DBs
NCBI-ProteinID:
AJG24993
UniProt:
A0A0C4YPL7
LinkDB
All DBs
Position
secondary:3783682..3786183
Genome browser
AA seq
833 aa
AA seq
DB search
MAADRIRPPLSQYEQKRDFNVTPEPASQIFSHPTPVKGLFVIQKHWAGRLHYDFRLELDG
VLLSWAVPKGPSFDPQQKRMAIHVEDHPLDYANFEGSIPPKQYGAGVVLVWDRGTWEPVG
DPHVGMNNGKLIFQLHGEKLAGLWEFVRISKPEDKQDSWMLFKKPDEWAQPLAEYDVVKA
LPDSVIDRPLGLVEQREPKTSFANPPAAVSKIDLSLAVKADLPAKLEPQLATLATSLPKG
DDWIVEMKFDGYRMMARIDKGRVRLFTRGGHDWTNKLKSLAAGVEKVGITSAWLDGELVV
LKDGLPDFNALQNAIDGARNENIVYFLFDIPYWNGQDLRKVPLTARQALLEHLIGEPTER
IRISQHFDAPPAQVFKAASELGLEGLMFKRQDAPYVSTRTQTWLKAKCTLRQEFVICGFL
DRSAAPQEVGSLLLGYHVDGKLRYAGNVGTGWDAKTGRDLWTRLTALAAPSAPFDAESVK
PGRWSKRSAGSEHWVRPLLVAEVAFAEWTPEGHVRQASFKGLRTDKPTSQIIREVKTTAA
VPVPSSVKVTHSERVIDPTTGLTKLDLVRYYESVAEWMLPHLKDRPLSMLRAPNGITEEQ
FFQKHPESKMPWLKEHDPALWPGHAALLTVGSLDALVSAAQMNVVEFHTWNSVVKRLNKP
DRVIFDLDPGEDLKWPYMQEAALLVRTLLTELGLKAWLKTSGGKGLHVVVPLLPRLDYDA
VKGFSQAFVQHIARTIPQRFSATSGPANRKGKVFVDYLRNGMGQTTVAAFSARARPGLGV
SMPVTWEQLMSLKSGAQWTVATARDYLSFQTADPWRDYWSTRQSLTTALKRLS
NT seq
2502 nt
NT seq
+upstream
nt +downstream
nt
atggccgctgaccgtatccgccctccgctctcccagtatgagcagaagcgtgacttcaat
gtcacgcccgagcctgcttctcagatttttagccacccgacgccggtcaaaggccttttc
gtcatccaaaagcactgggctggccgtctccactatgactttcgcctggagctcgatgga
gtcttactgagttgggctgttcccaagggtccaagcttcgacccgcagcaaaaacggatg
gccatccacgtcgaagaccatcccctcgactacgcaaactttgagggctccattccgcca
aaacagtatggcgcaggcgtggttctcgtgtgggaccgtggaacctgggagccggtaggc
gacccgcacgtgggaatgaacaacggaaaactcattttccaactccacggggaaaaactc
gccggcctgtgggagttcgtgcgcatctccaagcctgaagacaagcaagactcgtggatg
ctattcaagaagcccgatgagtgggcacaaccgctcgccgagtatgacgtcgtcaaagcg
ctgcctgacagcgtcatcgacagaccgctaggactggtcgagcagcgcgagccgaaaacc
tcttttgcgaatccgcccgccgcggtatcaaaaatcgacttgtcgcttgctgtcaaagcc
gacctgcccgcgaagctagagccacagctagccaccttagcaacctcactgccgaaaggc
gatgactggatagtcgagatgaagttcgacggctatcgcatgatggcgcgcatcgacaag
ggacgagtccgcttgttcacgagaggcggccatgactggaccaataaactgaagagtctc
gctgccggagtagagaaagtgggcatcacaagcgcttggctcgatggagagctcgtggtc
ctcaaggacggactccctgacttcaatgctttgcagaacgctattgacggcgctcgcaat
gagaacatcgtctacttcctcttcgatatcccttattggaacggccaagacctccgaaag
gtgcccctgaccgcccggcaagcgctcctggagcatctcatcggagagcccaccgagcgg
attcgaatcagccagcatttcgacgcgccgccggcgcaggttttcaaggccgcaagcgaa
ttggggctagagggcttgatgttcaagcggcaagacgcaccgtacgtgtcgacacgtacg
caaacgtggctaaaggcgaaatgcacactccgccaagaattcgtcatctgtggtttcctc
gaccggagtgctgcgccccaggaagtcggtagcctattgctcggctaccacgtggacggc
aagctccgctatgccggcaacgtcggcacaggttgggatgccaagaccggccgagacctg
tggacccgcttgaccgcacttgcagctccttccgcgccgtttgacgctgaatcagtcaaa
ccggggcgctggtccaagcgcagtgcgggtagcgagcattgggtccggccattgctggtc
gcagaggttgccttcgccgagtggacgcctgagggtcatgtgcgacaagcctcgttcaaa
ggtttgcgcaccgacaagccgacaagccaaatcatccgggaggtcaagaccaccgctgca
gtgcccgtgccaagctcggtcaaggtgacccattctgagcgggtcatcgacccgacgacc
ggtctcacaaagctcgacctagttcgctactacgagagtgttgcggagtggatgctacct
cacctgaaggaccgcccactctcgatgctgcgcgcgcccaatggcatcaccgaagaacag
ttttttcagaaacacccagagagcaagatgccgtggctcaaagagcacgaccccgccttg
tggccgggtcacgctgccttgctcaccgtcggcagcctggacgcgcttgtatccgctgct
cagatgaatgttgtggagttccatacctggaactctgtggtcaagcgcctcaacaagcct
gacagggtcatcttcgacctggaccctggtgaagacctgaagtggccgtacatgcaggaa
gcggcactccttgtccgcacactactgaccgaacttgggctcaaagcctggctgaagacc
agcggcgggaaaggcttgcacgtggtggtgccgctgttgccaaggcttgactacgatgcc
gtgaagggattctcccaggcgtttgtacaacacattgccagaaccatcccccaaaggttt
tctgcaacgtctgggcccgcgaatcgtaaggggaaggtcttcgtcgattacctgcgcaac
gggatgggccagacgaccgtggcagcattctctgcccgggcccgccctggcttgggggtg
tccatgccagtgacgtgggagcagcttatgtcgctgaaaagtggcgcgcaatggactgtc
gcgacagcgcgcgactaccttagcttccaaaccgcggacccatggcgtgactattggtcg
acgcggcagtcattgacgacagcacttaagcggctaagctga
DBGET
integrated database retrieval system
