Candidatus Symbiobacter mobilis: Cenrod_2015
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Entry
Cenrod_2015 CDS
T02877
Symbol
mfd
Name
(GenBank) transcription-repair coupling factor Mfd
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
cbx
Candidatus Symbiobacter mobilis
Pathway
cbx03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
cbx00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
Cenrod_2015 (mfd)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
cbx03400
]
Cenrod_2015 (mfd)
Enzymes [BR:
cbx01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
Cenrod_2015 (mfd)
DNA repair and recombination proteins [BR:
cbx03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
Cenrod_2015 (mfd)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TRCF
DEAD
UvrB_inter
Helicase_C
CarD_TRCF_RID
MFD_D3
ResIII
UB2H
Motif
Other DBs
NCBI-ProteinID:
AGX88087
UniProt:
U5N9K3
LinkDB
All DBs
Position
complement(2207790..2211281)
Genome browser
AA seq
1163 aa
AA seq
DB search
MDLPKLAHGKRFALPLPPGSADAMLLAELASREAAQGRIVAVVTADAVDAQRLCEEIAFF
APQLRCVLFPDWETLPFDTFSPHQDLISERLSTLWRIRRFDPADVADVVLLSATSALHRL
APPSFLAGTTFHFAVKQKLAAASLKEQLTLAGYRNVTQVLSPGEYTVRGGLIDLFPMGSP
VPYRIDLFDDDVDSIRIFDPDTQRSAKETVQEVRLLPGHEFPMDEEARKGFRSRWRETFE
GDPSRSQVYQDISKGIAVGGIEYYLPLFFDDTATIFDYLGADATVATVVLHGDIPQAIAH
FWKDIAERHRMAGMTPHRPVLPPGALFLSGEQFYERANRHAQLALRPGGDAPAAEGAFHN
LGDVSVTRGAEDPMARLRAHIQATPHKVLLLAESEGRRSSLLDILHSAHIEPVGVDALQD
FLRGPHKLGIAVCPLARGFSAVEQGVDFVTETELYRLPPAQRRRKKQEQVSDVEALVRDL
SELRPGDPVVHIAHGIGRYRGLITMDVGSDKAPRTEEFLHIEYADQACLYVPVGQLHLIG
RYTGVAAEEAPLHRLGSPQWEKAKRKAAQQVRDSAAELLDIYARRAAREGHAFRMSAQDF
ESFCADFGFEETPDQLAAIHAVVADLCSPRPMDRLVCGDVGFGKTEVALRAAFIAVMGGK
QVAILTPTTLLAEQHYQTIVDRFARWPVKVAELSRFRSAKENAKALQGLADGTIDIAVGT
HKLLSQDVRFQDLGLLIIDEEHRFGVRHKEKMKAMRAEVDVLTLTATPIPRTMGMALEGL
RDLSVIATAPQRRLAIKTFVRDDSESVIREAVLRELLRGGQVYFLHNEVATIEDRRSRLE
KLVPEARIAVAHGQMPERQLEGVMRDFVAQRSNLLLCSTIIETGIDVPSANTIVISRADK
FGLAQLHQLRGRVGRSHHQAYAYLMIPEAASLGKQARQRLDAIVAMEELGSGFYLAMHDL
EIRGAGEVLGENQSGNMMEIGFQLYSDMLAEAVRCLREGKEPDLLAPLHPATEINLHAPT
LLPTEYCDDIHLRLGFYKKLASAKAMRQIDAVVDELSDRFGPLPEAAQTLVASHRLRIVA
EACGVRKIDASPEQALLTFGERPAIDLAKVVRLLQSRKDLKLDKTQTKLWIAREVASPQE
RAQLVRDTLRSIADDEAARTVAA
NT seq
3492 nt
NT seq
+upstream
nt +downstream
nt
atggatttgcccaaattggcgcacggcaagcggtttgccttgcctcttccccccggttcc
gccgacgcgatgttgttggcggagttggcctcccgcgaagcagcccagggcaggatcgtt
gccgtcgttactgcggatgccgtcgacgcgcaacggctgtgcgaggaaatcgcgttcttc
gcaccccagttgcgctgcgtgctgtttcccgactgggaaaccctgcctttcgataccttt
tcgccgcaccaggatctgattagcgagcggctatccaccctgtggcgcatccgccgcttt
gaccctgccgacgtcgcggatgtcgtcttgctgagcgcgacatccgcgctgcaccggctt
gctccgcccagctttctggcgggaaccaccttccatttcgcggtcaagcaaaagctggcc
gccgcaagcctgaaggaacagctcacgctggcgggctaccgcaacgtcacgcaggtgctc
agcccgggggaatacaccgtgcgcggcgggttgatcgacctgttccccatgggcagcccc
gttccctaccgcatcgacctgttcgacgacgatgtcgattcgatccgcatcttcgacccc
gacacgcagcgcagcgccaaagaaacggtgcaggaagtgcgtctgctccccggccacgag
ttcccgatggatgaggaggcgcgcaagggtttccgtagccgttggcgcgagaccttcgaa
ggcgatccctctcgcagccaggtgtaccaagacatcagcaagggcatcgcagtcggtggg
atcgagtactacctgccgctattttttgacgacaccgcgacgatcttcgactacctcggc
gcagacgccacggtggccacggtggtattgcatggcgacattccccaagccatagcgcat
ttctggaaagacattgccgaacgccaccgcatggctggcatgaccccacaccgccctgtg
ctcccgccgggggcgctatttctgagcggggagcagttctacgaacgcgccaatcgccac
gcgcagttggcgctgcgtcctggtggggacgcgcctgctgcggaaggcgctttccacaac
ctgggtgatgtgtccgtcacacgcggcgccgaagacccgatggcccggctgcgtgcgcac
atccaagccacgccgcacaaggtgctgctgctggcggaaagcgaaggccgccggtcgagc
ctgcttgacatactgcactcggcgcacatcgagccggtcggggtcgatgccctgcaagac
tttctgcgcgggccgcacaagctgggcatcgcggtatgtccgctggcgcgcgggttctct
gccgtcgagcagggggtcgatttcgtcaccgaaaccgagctgtaccgcctgccccccgcg
caacgtcggcgcaaaaagcaagagcaggtcagcgacgtcgaagcgctggtgcgcgacctc
agcgagctgcgccccggagaccccgtcgtgcatatcgcccatggcatcgggcggtaccgg
gggctgatcaccatggacgttggcagtgacaaggcaccgcgcaccgaagagtttttgcac
attgagtacgcagaccaagcctgcctgtacgtcccggtcgggcagttgcacctgatcgga
cggtacacgggcgtggccgccgaagaagcccccctgcaccgcctaggcagcccgcaatgg
gaaaaagccaaacgcaaggctgcgcaacaggtgcgtgacagcgcggcggaactgctcgac
atctacgcccgccgcgccgcgagggaagggcacgccttccgcatgtccgcgcaggatttc
gaatccttctgcgccgatttcggtttcgaggaaacaccggaccaactcgctgcaatccat
gccgtcgtcgccgacctgtgcagcccgcgaccgatggatcgcctcgtctgcggggatgtc
ggcttcggcaagacggaagtggccctgcgcgcagcgttcatcgccgtcatggggggcaag
caggtggcgatcctcacgcccacgaccctgctggccgagcagcactaccagacgatcgtc
gaccgcttcgcacgttggccggtcaaggtggcagaactgagccggttccgatccgcgaag
gaaaacgccaaggccctccaaggattggcggatgggacgatcgacatcgccgtcggcacc
cacaagctgttgagccaagacgtgcggttccaggacctgggcctgctcatcatcgacgag
gaacaccgcttcggcgtgcgccacaaggaaaagatgaaagcgatgcgcgccgaagtcgac
gtgctcacgctcaccgccacgccgatcccccgaacgatgggcatggcgctcgaagggctg
cgcgacctcagcgtcatcgccacggcgccgcagcgcaggctggccatcaaaaccttcgtt
cgcgacgacagcgaaagcgtgatccgtgaggccgtgctgcgcgagctactgcgtggcggg
caggtctactttttgcacaacgaggtcgcaacgatcgaggaccgccgatcccgcctcgaa
aaactggtgcccgaagcgcgcatcgccgttgcgcacggacagatgcccgaacgccagctc
gaaggcgtgatgcgcgacttcgtcgcccagcgcagcaacctgctgctgtgctcgacgatc
atcgaaacggggatcgacgtacccagcgcgaacaccatcgtcatcagccgcgctgacaaa
tttgggctggcgcagttgcaccaattgcgtggccgcgtaggccgcagccaccaccaagcc
tacgcctatctgatgattcccgaagccgccagcctgggcaagcaagcgcgccagcggctc
gatgccatcgtggcaatggaagaactgggcagcggcttctacctggcgatgcacgacctg
gaaattcgcggcgcaggcgaggtgctgggggaaaaccagagcggcaacatgatggaaatc
ggcttccagctctacagcgacatgctggccgaggccgttcgctgcttgcgggaaggcaag
gaacccgatctgctcgcgcccttgcatccagcaacggagatcaaccttcatgcgcccaca
ctgctccccaccgagtactgtgacgacatccacctgcggctggggttttacaaaaaactc
gcttctgccaaggcgatgcgccagatcgacgccgtcgtcgacgagctgtctgaccgcttc
ggccccctgcccgaagcggcgcagacgctcgtcgcctcgcaccggctgcgcatcgttgcc
gaagcctgcggggtacgcaagatcgacgccagcccggaacaagccttgctcacctttggc
gaacggcctgccatcgacctcgcaaaagtggtgcggctgctgcaatcccgcaaagacctg
aagctcgacaaaacccaaacgaaactatggattgcccgcgaagtagcgtccccgcaggag
cgtgcgcaactggtgcgcgacacgctgcgcagcatcgctgacgacgaagctgcccgcact
gtggcggcgtag
DBGET
integrated database retrieval system
