Chryseobacterium camelliae: PFY12_10815
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Entry
PFY12_10815 CDS
T08762
Symbol
mfd
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
ccab
Chryseobacterium camelliae
Pathway
ccab03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
ccab00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
PFY12_10815 (mfd)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
ccab03400
]
PFY12_10815 (mfd)
Enzymes [BR:
ccab01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
PFY12_10815 (mfd)
DNA repair and recombination proteins [BR:
ccab03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
PFY12_10815 (mfd)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TRCF
DEAD
Helicase_C
UvrB_inter
CarD_TRCF_RID
ResIII
RecG_dom3_C
UB2H
PGDH_inter
SBP_bac_3
Motif
Other DBs
NCBI-ProteinID:
WBV59547
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All DBs
Position
2359534..2362899
Genome browser
AA seq
1121 aa
AA seq
DB search
MQLKTISEKFLPDLLKNEFGKEIFIQLENNQHISVKGNAGSSVSIFVAELFLTQKKHILY
LVDDKEDALYANTEMEDLLGKDKVLYFPATHLEPYQIEKTQNANLVLRTEVINKITSSKS
PKVIVAYSGALSEKVLKKEDFKAISHHIKVGDQLDFDFVDELLNHYSFQQADFVSEPGEF
SVRGGIVDVFSFSNEKPYRITFFGNEVESIKIFDIETQLSVEKVNDFQLVSNMNFTVTGS
RVSLLQLLPKESFVISKNGIVGMQKLKTFYEKSLVKYDTLNKDIAHRAPQELFISDQEFL
FDYKKFKTVDFGSASIEGLIELTEMKINQIAQPTFHKNFELLIEDLEEKQNTGFDTWISF
STEKQKERLESIFEELEHQLPFKSFKSELHEGFVDHDHKILVYTDHQIFDRYQRYKAKNT
FAKSEQLTLKDLMSLKIGDYIAHIDHGIGKFMGLVKVNNDGKIQECFKLTYKNGDLLYVS
IHSLHKISKYNGPDGKEIVLSKLGSPTWKSLKQKTKARVKQLAFDLIKLYAQRKSAKGFA
YTPDSYLQNELEASFLYEDTPDQEKATIDVKKDMEADTVMDRLVCGDVGFGKTEVAIRAA
FKAATDGKQVAVLVPTTILAFQHYRSFKERLKDFPVNVAYVNRFRTAKQKSETLEALKEG
KVDIIIGTHQLASSSVKFKDLGLLIIDEEHKFGVSVKDKLKTLKTDVDTLTLTATPIPRT
LQFSLMAARDLSVIKTPPPNRQPVDTQLIGFSEEILRDAVSYELQRDGQVYFINNRIENL
KDIAGLIQRLVPDARVITGHGQMEGKQLEKNVLDFMDGKYDVLVSTTIVESGVDVPNANT
IFINDAQRFGMADLHQMRGRVGRSNRKAFCYLITPPYDMMTSDARKRLEAIEQFSDLGSG
FQIAMKDLEIRGAGDLLGAEQSGFINEMGFETYQKLMQEALEELKDDQEFENLFENEEDR
NKLFKSVKDVNIDTDLELMLPDWYISNTEERLSLYQKLAEIDSEENLLKFESELIDRFGN
LPKEAVNLLKSVSLKWLAAEIGFEKIVMKNGVFLGYFPGNPQDKFYQTDRFRHIITYLTQ
NPKEAQLKEKIGKEGNNLMMRKDKVGNVDEVNLLLKTILKV
NT seq
3366 nt
NT seq
+upstream
nt +downstream
nt
atgcagctaaaaaccatcagcgaaaaatttcttccggacttgcttaagaatgaattcgga
aaggagatttttattcaactggaaaacaatcaacatatttctgtgaagggaaatgcggga
tcttcggtttccatttttgtggccgaacttttccttacgcagaaaaaacatattctttat
ctggttgatgataaggaagatgctttgtatgccaatacggaaatggaagatctgctgggg
aaagacaaggttttgtatttcccggcaacccatcttgagccgtatcagattgaaaaaacg
cagaatgccaatttggtgttaaggacagaagtgatcaacaaaattacttcgagcaaatct
ccgaaggttattgtagcttattcaggagctttgtcggagaaggttttgaagaaagaagac
tttaaagccatttctcatcatataaaagtaggcgatcagcttgatttcgattttgtggat
gaattattgaatcattatagcttccaacaagccgatttcgtttccgaacccggagaattt
tccgtaagaggaggaattgttgatgttttttcgttctcaaatgaaaaaccgtaccgtatc
actttttttggaaacgaagtggaaagcataaaaatatttgatatcgaaacacagctttcg
gtagaaaaagtaaatgattttcaattggtttccaatatgaattttacggtgacgggaagc
agggtttctttacttcagttgttgcctaaagaaagctttgtgatctctaaaaacgggatt
gtcggaatgcagaagctgaaaacattctacgaaaaatcgttggtaaaatatgatacttta
aacaaagatattgcgcacagagcgccacaggaattatttatttctgatcaggaattttta
tttgattataaaaaatttaaaaccgtagacttcggaagtgcttctattgaaggattgatc
gaattgacggaaatgaagatcaatcagattgcgcagcctactttccataagaatttcgaa
ttattaattgaagatcttgaagaaaagcaaaatacgggttttgatacttggatttccttt
tcaacagaaaagcaaaaagaaagattagaatcgatttttgaggaactggaacatcagctt
ccttttaaaagtttcaaatctgaacttcatgaaggttttgtagatcatgaccataaaatt
ttagtttatacggatcatcagattttcgatcgataccaaaggtataaagcgaaaaataca
ttcgccaaatcggagcagctgactctgaaagatttgatgtccttaaagattggagattat
attgcgcacatcgatcacggaatcggaaaattcatgggattggtgaaagtaaacaacgac
ggaaaaatccaggaatgttttaaactgacttataaaaacggagatttattgtatgtgagt
attcattcgcttcataaaatttcaaaatacaacggtccggacggtaaagaaattgtttta
agcaaattaggttctccaacctggaaatccttaaagcagaaaacaaaagccagagtaaag
cagcttgcattcgatctgataaaactatacgctcaaagaaaatccgcgaaaggttttgca
tataccccggattcttatttgcaaaatgaactggaagcaagtttcctgtatgaagacact
ccggatcaggaaaaagcaaccatcgatgtgaaaaaagacatggaagcggatacggtgatg
gatcgtctggtgtgtggagatgtaggtttcggtaaaacggaagtggcaattcgtgcagcg
ttcaaagcagcaacagacgggaagcaggttgccgtattggttccgacaacaattttggct
ttccagcattatagaagtttcaaggaaagattaaaagattttccggtaaatgtagcttat
gtcaatcgtttcagaacggcaaaacaaaaatctgaaacgttggaagctttaaaagaagga
aaagttgatattataataggaacccatcaattggcaagcagttctgtgaagtttaaagat
ttaggactgttaattattgatgaggaacataaattcggagtttctgtaaaagataagttg
aaaacattaaaaacggatgttgatacgctgactttaacagcaacgcctattccaaggact
ttacagttttctttaatggctgcgagggatttatcggtgatcaaaacgccaccgccaaac
aggcagcctgttgatacgcaattgatcggctttagtgaagaaattcttcgtgacgcggtt
tcttatgagcttcagcgtgacggacaggtgtatttcatcaacaacaggattgaaaacctt
aaagatattgcaggattaattcaaaggttagttccggatgcaagagtaattaccggtcac
ggacaaatggaaggcaagcagctggaaaaaaatgtccttgattttatggatggaaaatac
gacgttttggtttctacaaccatcgtagaaagtggagtagacgttccaaatgcgaatacg
attttcatcaacgatgcccaaaggttcggaatggcggatcttcaccagatgagaggtcgt
gtaggtagaagcaacagaaaggctttctgctatctgatcactcctccttatgatatgatg
acttcggatgcaagaaaacgtctggaagccattgaacagttttctgatttgggaagcggt
ttccagattgcgatgaaggatctggaaattcgtggagcgggagatttattgggtgccgaa
caaagcggattcattaatgaaatgggatttgaaacctatcagaaactaatgcaggaggct
ttggaagaattaaaagatgatcaggaatttgaaaatctttttgaaaatgaagaagatcga
aataagctttttaaatcggtaaaagatgtgaatattgataccgatttagaactgatgttg
ccggattggtatatttctaataccgaagaaagattgtcactttatcaaaaattagctgag
atcgatagcgaagaaaatttattaaagtttgaatctgaattaatagaccgttttgggaat
ttaccgaaagaagccgtcaatttattgaaaagtgtaagtttgaaatggctggctgcagaa
atcggttttgaaaaaatagtcatgaagaacggggtgtttttagggtattttccaggcaat
cctcaggataagttctatcagaccgatagattcaggcatattattacttatttaacgcaa
aatcctaaggaagcacagctgaaggagaaaataggaaaagaaggcaataacctgatgatg
agaaaagataaagtaggaaatgtggatgaggtcaatcttttgttaaaaacaattttaaaa
gtataa
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