Cutaneotrichosporon cavernicola: CcaHIS019_0411460
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Entry
CcaHIS019_0411460 CDS
T09540
Symbol
CcaverHIS019_0411460
Name
(RefSeq) uncharacterized protein
KO
K14328
regulator of nonsense transcripts 3
Organism
ccac
Cutaneotrichosporon cavernicola
Pathway
ccac03013
Nucleocytoplasmic transport
ccac03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
ccac00001
]
09120 Genetic Information Processing
09122 Translation
03013 Nucleocytoplasmic transport
CcaHIS019_0411460 (CcaverHIS019_0411460)
03015 mRNA surveillance pathway
CcaHIS019_0411460 (CcaverHIS019_0411460)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ccac03019
]
CcaHIS019_0411460 (CcaverHIS019_0411460)
Messenger RNA biogenesis [BR:
ccac03019
]
Eukaryotic type
mRNA surveillance and transport factors
Surveillance factors
Surveillance complex
CcaHIS019_0411460 (CcaverHIS019_0411460)
mRNA cycle factors
P-body specific factors
CcaHIS019_0411460 (CcaverHIS019_0411460)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Smg4_UPF3
Motif
Other DBs
NCBI-GeneID:
85496196
NCBI-ProteinID:
XP_060457591
LinkDB
All DBs
Position
4:complement(join(3009168..3009916,3009952..3010020,3010055..3010153,3010189..3010298,3010474..3010631))
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AA seq
394 aa
AA seq
DB search
MPRGTKTPTARLKLVIRRLPPTLPEETFWRVVEPFVEGKYAWRRYVKGRPGDAYGVHPQH
SRAYVLMNDTESLIAFHAGFDGHIFRAKTGAEFQAVVEYAAIEKTPYKAKAKKDAREGTI
DDDPDFLAFLENRGVVETKPPLEIAPPPPQPTSTPLLDALRASASKSRAKAAKKKEKAAA
KKDDKGTNAEAKSDKARAAALASISEAANKRAPKAGGGAVVMVAGKGREVFVAPADTVQD
GDPRVSTKSDKEKKKRKPRKKKEAADEGGEPPSAAGGVGAGPGPAKEAAGKKDARAEGGV
AVVDEASTDSKRRNRNRKRGGGGGGAGAGVGAGGGESRPAPVDGGGVEETASGLSRRQKA
RAAREQGGGAGGPPSAPRGRGRGGILPTEARIDM
NT seq
1185 nt
NT seq
+upstream
nt +downstream
nt
atgccgcgtggtacaaaaacgcccacggcgcgtctcaaactcgtcatccgccgccttccc
ccaaccttgccggaagagacgttctggcgcgtcgtcgagcccttcgtcgagggaaagtac
gcttggcggcgttatgtcaagggccgacccggagacgcttacggcgtgcatccacaacac
tcacgcgcttacgtgctcatgaacgacaccgagtcgctcattgcattccatgcaggcttt
gacggacatatcttccgcgccaagactggcgccgagttccaggccgtcgtcgagtatgcg
gcgatcgagaagacaccgtacaaggccaaggcgaagaaggacgcacgtgaagggaccatc
gacgacgacccagactttctcgcctttctcgagaacagaggcgtggttgagaccaagcca
cccctcgagattgccccccctcctccccaaccaacctcgacacccctgttagacgcatta
cgcgcgtcggcgagtaagagcagagccaaagcggcgaagaagaaggagaaggcggcagcc
aagaaggacgacaagggcacgaatgcggaagcgaagagcgacaaggcgcgcgcggccgca
ctcgcctccatatccgaggcggcaaacaagcgtgcgcccaaggctggtggcggcgcggtg
gtcatggtcgccggcaaggggcgcgaggtgttcgtcgcgcccgctgacacggtgcaggac
ggcgatccacgcgtcagcacgaagagcgacaaggagaagaagaagagaaaaccgcggaag
aagaaggaggcggcagatgagggcggcgagccaccgagcgcagccggtggagtcggggcc
gggccagggccagcaaaagaggcggccgggaagaaggacgcgcgggcagagggtggcgtc
gcggtggtggacgaggcgagcaccgacagcaagcgccggaatcgcaatcgcaaacgcggg
ggaggtggtggcggggctggggctggggttggggctgggggcggtgagagtcgacctgca
ccggttgacgggggtggggtggaggagacggcgtctggactgtcgcggcgccagaaggcc
cgcgctgctcgcgagcagggtggcggtgccgggggaccgccttcggccccgcgtgggcgc
ggtcgcggtggaatactgccgactgaggcgcgtattgacatgtaa
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