Cervus canadensis (wapiti): 122420727
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Entry
122420727 CDS
T07554
Symbol
LIG1
Name
(RefSeq) DNA ligase 1 isoform X1
KO
K10747
DNA ligase 1 [EC:
6.5.1.1
6.5.1.6
6.5.1.7
]
Organism
ccad
Cervus canadensis (wapiti)
Pathway
ccad03030
DNA replication
ccad03410
Base excision repair
ccad03420
Nucleotide excision repair
ccad03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
ccad00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
122420727 (LIG1)
03410 Base excision repair
122420727 (LIG1)
03420 Nucleotide excision repair
122420727 (LIG1)
03430 Mismatch repair
122420727 (LIG1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
ccad03032
]
122420727 (LIG1)
03400 DNA repair and recombination proteins [BR:
ccad03400
]
122420727 (LIG1)
Enzymes [BR:
ccad01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
122420727 (LIG1)
6.5.1.6 DNA ligase (ATP or NAD+)
122420727 (LIG1)
6.5.1.7 DNA ligase (ATP, ADP or GTP)
122420727 (LIG1)
DNA replication proteins [BR:
ccad03032
]
Eukaryotic type
DNA Replication Elongation Factors
Other elongation factors
122420727 (LIG1)
Prokaryotic type
Elongation factors (archaeal)
Other elongation factors
122420727 (LIG1)
DNA repair and recombination proteins [BR:
ccad03400
]
Eukaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
Long Patch-BER factors
122420727 (LIG1)
NER (nucleotide excision repair)
Other NER factors
122420727 (LIG1)
MMR (mismatch excision repair)
Other MMR factors
122420727 (LIG1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_A_M
DNA_ligase_A_N
DNA_ligase_A_C
PucR
Motif
Other DBs
NCBI-GeneID:
122420727
NCBI-ProteinID:
XP_043292064
LinkDB
All DBs
Position
18:complement(19811378..19837946)
Genome browser
AA seq
917 aa
AA seq
DB search
MQRSIMSFFQPKNEGKVKKPEKETSNSIRETESPPKVALKERNRVVSEGDSPVKRPGRKA
TRVLGSEGEEEEEEAPTTPRSQKPASDSPQASPPSPVILPESSPSRSNPSPAVFSPSGIP
KRRTARKQLPKRTFRDVLKEQDEDEDPETKKKKEEEEAEIPTESLPEPEGGNKEEAEGGD
QPTTPLEPQKTATESPPESVSESEVTVKQEPQEDGQAQLPPKAPKTLSSFFSPRKPAVKK
EAKEEGPGALRKEETKGHLDPPSYNPAKNNYHPIEDACWKAGQRVPYLAVARAFEKIEEV
SARLRMVETLSNLLRSVVALSPADLLPVLYLSLNRLGPPQQGLELGIGEGILLKAVAQAT
GRQLESVRAEVAEKGDVGLVAESSRSTQRLVLPPPALTATGVFAKFRDIAQLAGSASTTK
KIDVIKGLFVACRHSEARFIARALSGRLRLGLAEQSVLAALAQAVSLTPPSQECPPALVD
AGKGKTAEARKAWLEEQGMILKQTFCEVPDLDRIVPVLLEHGLERLPEHCRLSPGVPLKP
MLAHPTRGVSEVLKRFEEAAFTCEYKYDGQRAQIHVLEGGEVKIFSRNQEDNTGRYPDII
SRIPKIKLPSVTSFILDTEAVAWDREKKQIQPFQVLTTRKRKEVDAAEIQVQVCLYAFDL
IYLNGESLVREPLSRRRQLLRENFVETEGEFVFATSLDTKDTEQIAEFLEQSVKDSCEGL
MVKTLDVDATYEIAKRSHNWLKLKKDYLEGVGDTLDLVVIGAYLGKGKRAGRYGGFLLAS
YDEESEEFQAICKLGTGFSDEELEEHHQRLQALVLPTPRSYVRADGAVAPDHWLDPSDVW
EVKCADLSLSPIYPAARGLVDSEKGISLRFPRFIRVREDKKPEQATTSAQVAGLYKKQSQ
IQNQQGAEPDSEQEEFY
NT seq
2754 nt
NT seq
+upstream
nt +downstream
nt
atgcagcgaagtatcatgtcatttttccagcccaagaatgagggcaaagtgaagaagcca
gagaaggagacatccaacagcatcagagaaacagagtcccctccgaaggtggcgctgaag
gagcggaatagagtggtgtctgagggcgactctccagtgaagaggccggggaggaaggcg
acccgggtcctgggcagtgagggcgaggaggaggaggaggaagcccccaccacccccaga
agccagaagcctgcttcagactctccacaggcctcacctcccagtcctgtcatactgcct
gagagcagcccttcccgctccaacccctctccagcggtgttctccccatcagggatcccg
aagcgtcgcacggcccggaagcagcttcccaaacggacatttcgagatgtgctgaaagag
caggacgaggacgaggacccagaaactaagaagaagaaggaggaagaagaagcagagata
ccaacagaaagcctcccagagcctgaagggggcaacaaggaggaagcggaaggcggggac
cagcccacgacgccccttgagccccagaagaccgccacagagtccccgccagaaagcgtt
tcagagtccgaggtgacggtgaagcaggaaccacaggaggacggccaggctcagctgccc
cccaaagcgccaaagaccctcagcagtttcttctccccccggaagccagctgtcaaaaaa
gaagccaaagaagaaggacctggtgctctgagaaaggaggagaccaagggacacctggac
ccaccgagctacaatcctgccaagaacaactaccaccccatcgaagatgcctgctggaag
gcaggccagagggtcccttatctggctgtggcccgggcgttcgagaagattgaggaggtc
tctgctcggctccggatggtggaaacgctgagcaacctgctgcgctccgtggtggccctg
tcacctgccgacctcctgcccgtactctacctgagcctcaaccgcctggggccaccccag
cagggcctggagctcggcatcggagagggcatcctcctcaaggcagtggcccaggccacg
ggtcggcagctggagtccgtccgggccgaggtggctgagaagggtgatgtggggctggtg
gccgagagcagccgcagcacccagaggctcgtgctgccgccgcctgcgctcaccgccacc
ggcgtcttcgccaagttccgggacatcgcgcagctggcaggcagcgcttccacaaccaag
aagatagatgtcatcaaaggcctctttgtggcctgccgtcactcagaggcacgtttcatt
gccagagccctgagtggacggctgcgcctcgggctggccgagcagtcggtgctggcggcc
ctcgcccaggctgtgagcctcacgccccccagtcaagaatgcccccccgccttggtggat
gccgggaagggcaagacggcagaagccagaaaggcgtggctggaggagcaaggcatgatc
ctgaagcagaccttctgtgaggtgcctgacctggaccggatcgtccccgtgctgctggag
cacggcctggagcggctcccggagcactgcaggctgagcccaggggttcccctgaaacca
atgttggcccaccccacccggggtgtcagcgaggtcctgaagcgctttgaggaggcagct
ttcacctgcgagtacaaatacgatgggcagagggcacagatccacgttctggaaggcggg
gaagtgaagatcttcagcaggaatcaggaggacaatactggaaggtaccccgacatcatc
agccgcatccccaagattaaactcccatctgtcacatccttcatcctggacacagaagct
gtagcttgggaccgggaaaagaagcagatccagccattccaagtgctcaccacccgcaaa
cgcaaggaggtggatgcggcagagatccaggtgcaggtgtgtctgtatgctttcgatctc
atctacctcaacggagagtccctggtacgtgagcccctctcccgacgccggcagctgctc
cgggagaacttcgtggagacagagggcgagttcgtctttgccacctccctggacaccaag
gacacggagcagattgccgagttcctggagcagtcggtgaaagactcctgcgaggggctg
atggtgaagaccctggacgtggacgccacctacgagatcgccaagaggtcgcacaactgg
ctcaagctgaagaaggactacctcgagggtgtgggcgacaccctggaccttgtagtgatc
ggtgcctacctgggcaaggggaaacgggctggccggtacgggggcttcctgctggcctcg
tacgatgaggagagcgaggagttccaggccatctgcaagcttggaactggcttcagtgac
gaggagctggaagagcaccaccagaggctccaggccttagtgctgcccaccccgcgctcc
tacgtccgggccgacggcgcagtggcccccgaccactggctggaccccagcgacgtgtgg
gaggtgaagtgcgcggacctctccctgtcccccatctaccctgcggcccggggcctggtg
gacagtgagaaggggatctccctccgcttccctcggtttattcgtgtccgtgaagacaag
aagccggagcaggccactaccagtgcccaggtggccggtctgtacaagaagcaaagtcag
attcagaaccagcagggtgctgagccggactccgagcaggaagagttctactag
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