Cyanistes caeruleus (blue tit): 111924496
Help
Entry
111924496 CDS
T05602
Symbol
PABPC1
Name
(RefSeq) polyadenylate-binding protein 1
KO
K13126
polyadenylate-binding protein
Organism
ccae
Cyanistes caeruleus (blue tit)
Pathway
ccae03015
mRNA surveillance pathway
ccae03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
ccae00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
111924496 (PABPC1)
09123 Folding, sorting and degradation
03018 RNA degradation
111924496 (PABPC1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ccae03019
]
111924496 (PABPC1)
03041 Spliceosome [BR:
ccae03041
]
111924496 (PABPC1)
Messenger RNA biogenesis [BR:
ccae03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
eIF4F and regulatory proteins
111924496 (PABPC1)
mRNA cycle factors
Stress granule specific factors
111924496 (PABPC1)
Spliceosome [BR:
ccae03041
]
Complex C
Other components
Complex C specific factors
111924496 (PABPC1)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
RRM_1
PABP
RRM_5
RRM_occluded
RRM_7
RRM_3
ATP-grasp_2
YflT
Motif
Other DBs
NCBI-GeneID:
111924496
NCBI-ProteinID:
XP_023776466
LinkDB
All DBs
Position
2
AA seq
566 aa
AA seq
DB search
MNFDVIKGKPVRIMWSQRDPSLRKSGVGNIFIKNLDKSIDNKALYDTFSAFGNILSCKVV
CDENGSKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRFKSRKEREAELGARAKEFT
NVYIKNFGEDMDDERLKELFGKFGPALSVKVMTDESGKSKGFGFVSFERHEDAQKAVDEM
NGKELNGKQIYVGRAQKKVERQTELKRKFEQMKQDRITRYQGVNLYVKNLDDGIDDERLR
KEFSPFGTITSAKVMMEGGRSKGFGFVCFSSPEEATKAVTEMNGRIVATKPLYVALAQRK
EERQAHLTNQYMQRMASVRAVPNPVINPYQPAPPSGYFMAAIPQTQNRAAYYPTNQLAQL
ARPSPRWTAQGARPHPFQNMPGAIRPAAPRPPFSTMRPASSQVPRVMSTQRVANTSTQTM
GPRPAAAATAATPAVRTVPQYKYAAGVRNPQQHLNTQPQVAMQQPAVHVQGQEPLTASML
ASAPPQEQKQMLGERLFPLIQSMHPTLAGKITGMLLEIDNSELLHMLESPESLRSKVDEA
VAVLQAHQAKEAAQKAVNNPTGVPSV
NT seq
1701 nt
NT seq
+upstream
nt +downstream
nt
atgaactttgatgtcattaaaggcaaaccagtgcgcatcatgtggtctcagcgcgatcca
tctctacgcaaaagcggtgtaggaaacatcttcatcaaaaatttggacaaatcaattgat
aacaaagctttgtatgacacattttctgcttttgggaacatcctctcttgtaaggtggtg
tgtgatgaaaatggatccaagggttatggatttgtacattttgagacacaagaagctgca
gaaagagctattgaaaaaatgaatggtatgctgcttaatgaccgcaaagtatttgttgga
aggtttaaatctcgcaaggaacgtgaggcagagcttggagccagagcaaaagaattcacc
aatgtttacatcaaaaattttggagaagacatggatgatgagagacttaaggaactcttt
ggcaagtttggtcctgctttaagtgtaaaagttatgactgatgagagtggaaaatccaaa
ggctttggcttcgttagttttgaaagacacgaagatgcccagaaagctgtagatgagatg
aatgggaaagagctcaatggaaaacaaatctatgttggccgggctcagaaaaaggtggaa
agacagacggagctgaagcgcaagtttgaacaaatgaagcaggacaggatcaccagatac
cagggtgtaaacctttatgtgaaaaatcttgatgatgggatcgatgatgagcgtctccga
aaagagttctctccatttggtacaatcactagtgcaaaggtgatgatggaaggtggccgc
agcaaagggtttggatttgtgtgcttttcgtcaccagaagaagccaccaaagcagtcaca
gaaatgaatggtagaattgtggctactaaaccattatatgtagctctagcccagcgtaaa
gaggagcgccaagctcatctcaccaaccagtacatgcagaggatggcaagtgtaagagca
gtacctaatcctgtaatcaacccctaccagccagcacctccttcaggatacttcatggca
gctattcctcagactcagaaccgtgctgcgtactatcctactaatcagcttgctcaactt
gctagacctagtcctcgctggactgctcagggtgccagacctcatccattccaaaacatg
cctggtgctatccgcccagcagcacccagaccacctttcagtaccatgagaccagcttct
tcccaagttccacgagtcatgtcaacacagcgtgttgctaatacatcaacacaaacaatg
ggtccacgtcctgcagcagcagccactgcggccactcctgccgtgcgcacagtaccacag
tacaaatacgctgcaggtgttcgcaatcctcagcagcacctcaacacgcagccacaggtt
gctatgcagcagcctgctgtccatgtgcaaggtcaggaacccttgactgcttccatgttg
gcttctgcccctccacaagaacaaaagcagatgttaggtgaacgcctattcccccttatt
caaagcatgcaccctactctggcgggtaagatcactggtatgttgttggagattgacaac
tctgaactcctccacatgctcgagtctcctgagtctcttcgttcgaaggttgatgaagct
gtagccgtactacaagcccaccaagctaaagaggctgctcaaaaggcagttaataatccc
actggggttccaagtgtttaa
DBGET
integrated database retrieval system
