Cyanistes caeruleus (blue tit): 111940326
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Entry
111940326 CDS
T05602
Symbol
UPF1
Name
(RefSeq) regulator of nonsense transcripts 1
KO
K14326
regulator of nonsense transcripts 1 [EC:
5.6.2.5
5.6.2.3
]
Organism
ccae
Cyanistes caeruleus (blue tit)
Pathway
ccae03013
Nucleocytoplasmic transport
ccae03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
ccae00001
]
09120 Genetic Information Processing
09122 Translation
03013 Nucleocytoplasmic transport
111940326 (UPF1)
03015 mRNA surveillance pathway
111940326 (UPF1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ccae03019
]
111940326 (UPF1)
Enzymes [BR:
ccae01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.3 DNA 5'-3' helicase
111940326 (UPF1)
5.6.2.5 RNA 5'-3' helicase
111940326 (UPF1)
Messenger RNA biogenesis [BR:
ccae03019
]
Eukaryotic type
mRNA surveillance and transport factors
Surveillance factors
Surveillance complex
111940326 (UPF1)
mRNA cycle factors
Common to processing body (P body) and stress granule
111940326 (UPF1)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
UPF1_Zn_bind
AAA_12
AAA_11
UPF1_1B_dom
AAA_30
AAA_19
ResIII
SLFN-g3_helicase
ATPase
nSTAND3
DEAD
Helicase_RecD
AAA_16
UvrD-helicase
SRP54
UvrD_C_2
AAA_22
Motif
Other DBs
NCBI-GeneID:
111940326
NCBI-ProteinID:
XP_023798729
LinkDB
All DBs
Position
28
AA seq
1078 aa
AA seq
DB search
GCSSSFAVEVSQCHSSFGAGGGVWGEFGGLFGVDLQVNGPDGILQNGAVDENVAKTSQLL
AELNFEEDEEDTYYTKDLPVHACSYCGIHDPACVVYCNTSKKWFCNGRGNTSGSHIVNHL
VRAKCKEVTLHKDGPLGETVLECYNCGCRNVFLLGFIPAKADSVVVLLCRQPCASQSSLK
DINWDSSQWQPLIQDRCFLSWLVKIPSEQEQLRARQITAQQINKLEELWKENPSATLEDL
EKPGVDEEPQHVLLRYEDAYQYQNIFGPLVKLEADYDKKLKESQTQDNITVRWDLGLNKK
RIAYFTLPKTDSDMRLMQGDEICLRYKGDLAPLWKGIGHVIKVPDNYGDEIAIELRSSVG
APVEVTHNFQVDFVWKSTSFDRMQSALKTFAVDETSVSGYIYHKLLGHEVEDVIIKCQLP
KRFTAQGLPDLNHSQVYAVKTVLQRPLSLIQGPPGTGKTVTSATIVYHLARQGNGPVLVC
APSNIAVDQLTEKIHQTGLKVVRLCAKSREAIDSPVSFLALHNQIRNMDSMPELQKLQQL
KDETGELSSADEKRYRALKRTAERELLMNADVICCTCVGAGDPRLAKMQFRSILIDESTQ
ATEPECMVPVVLGAKQLILVGDHCQLGPVVMCKKAAKAGLSQSLFERLVVLGIRPIRLQV
QYRMHPALSAFPSNIFYEGSLQNGVTAADRVKKGFDFQWPQPDKPMFFYVTQGQEEIASS
GTSYLNRTEAANVEKITTKLLKAGAKPDQIGIITPYEGQRSYLVQYMQFSGSLHTKLYQE
VEIASVDAFQGREKDFIILSCVRANEHQGIGFLNDPRRLNVALTRARYGVIIVGNPKALS
KQPLWNHLLNYYKEQKVLVEGPLNNLRESLMQFSKPRKLVNTINPGARFMTTAMYDAREA
IIPGSVYDRSSQGRPSNMYFQTHDQIGMISAGPSHVTAMNIPIPFNLVMPPMPPPGYFGQ
ANGPAAGRGAPKGKTGRGGRQKNRFGIPGTSQSNLPNSQASQDVVSQPFSQGPLTQGYIS
MSQPSQMSQPGLSQPELSQDSYLGDEFKSQIDVALSQDSTYQGERAYQHGGVTGLSQY
NT seq
3237 nt
NT seq
+upstream
nt +downstream
nt
ggctgttccagctcttttgctgtggaggtttctcagtgccactcgagttttggggctgga
ggaggagtttggggtgaatttgggggtttatttggcgttgatttgcaggtgaatggtcct
gatgggatcctgcagaatggagctgtggatgagaacgtggccaagaccagccagctcctg
gctgagctcaacttcgaggaggatgaggaggacacttactacaccaaggatctccccgtg
cacgcctgcagttactgtgggatccacgaccctgcctgtgtggtttactgcaacaccagc
aagaaatggttctgcaacgggcgtgggaacacctctggcagccacatcgtgaatcacctg
gtgagagccaagtgcaaggaggtgactctgcacaaggacgggcccctgggagagaccgtc
ctggagtgttacaactgcggctgccgcaacgttttcctgctgggcttcatcccagccaag
gctgactcggtggtggttctgctctgcaggcagccctgtgccagccagagcagcctgaag
gacatcaactgggacagctcccagtggcagcccctgatccaggaccgctgcttcctctcc
tggctggtgaagattccctcggagcaggagcagctccgggcccgccagatcacggcccag
cagatcaacaaactggaggagctctggaaggaaaatccatctgcaaccctggaggacttg
gaaaaacctggtgttgatgaggagccccagcatgtcctgcttagatatgaagatgcttat
caataccaaaatatatttggtcctctggtcaagcttgaggcagattatgacaagaaactc
aaggaatctcagacccaagataacatcacagtcaggtgggacctgggcttgaacaagaag
agaattgcttatttcactttgccaaagactgattcagacatgcgcctcatgcaaggagat
gagatctgcctgaggtacaagggagacctggccccgctctggaagggaattgggcacgtg
atcaaagttcccgataattatggtgatgagatagccatcgagctgaggagcagcgtggga
gctccagtggaggtcactcacaacttccaggtggattttgtgtggaaatccacttctttt
gacaggatgcagagcgctctgaaaacgtttgcagtggacgagacctcggtgtctgggtac
atctaccacaaactgctgggccacgaggtggaagatgtcatcatcaaatgccagctgccc
aaacgcttcacagcccagggactccctgatctcaaccactctcaggtttatgctgtcaaa
accgtcctgcagcgtcctctgagccttatccagggtccccctggcactgggaaaacggtg
acatcggccaccatcgtgtatcacctggccaggcagggcaatgggcccgtgctggtgtgt
gcccccagcaacatcgccgtggatcagctgacggagaagatccaccagaccggcctcaag
gtggttcgtctgtgtgccaagagccgcgaggccatcgactcgccggtgtccttcctggcc
ctgcacaaccagatccggaacatggacagcatgccggagcttcagaagctgcagcagctc
aaggatgagactggagagctttcctctgctgatgagaagcgttaccgggcgctgaaacgc
acggcagagcgggagctgctcatgaacgccgatgtgatctgctgcacctgtgtgggagct
ggcgatccccgcctggccaagatgcagttccgctccatcctcatcgacgagagcacgcag
gccaccgagcccgagtgcatggtgcccgtggtcctgggggcaaagcagctgatcctggtg
ggtgaccactgccagctggggcccgtggtgatgtgcaagaaggcggccaaggcagggctg
tcgcagtcgctgttcgagcggctggtggtgctgggcatccggcccatccgcctgcaggtg
cagtaccgcatgcaccccgccctcagcgccttcccctccaacatcttctacgagggatcc
ctgcagaacggcgtcaccgcagctgacagggtgaagaaaggcttcgatttccagtggccc
cagcctgacaaacccatgttcttctacgtgacccagggacaggaggagattgccagctca
ggcacctcttacctgaacaggacggaagctgccaacgtggagaagatcaccaccaagctg
ctcaaggctggggccaagcctgaccagattggcatcatcaccccctacgagggccagcgc
tcctacctggtgcagtacatgcagttcagcggctccctgcacacaaagctctaccaggaa
gtggaaattgcgagtgtggacgccttccagggcagggagaaggatttcatcatcctgtcc
tgcgtgagggccaacgagcaccaggggatcggcttcctcaacgaccccaggaggctcaac
gtggccctgaccagagccaggtacggggtgatcatcgtggggaaccccaaagccctgtcc
aagcagcccctctggaatcacctcctgaattactacaaggagcagaaggtgctggtggag
gggcccctcaacaacctgcgcgagagcctgatgcagttcagcaaaccccgcaagctcgtc
aacaccatcaaccccggtgcccgtttcatgaccactgccatgtatgatgcacgggaggct
atcatccctggatctgtctacgaccgcagcagccaagggcgtccatccaacatgtacttc
cagacccacgaccagattgggatgatcagcgccggccccagccacgtcactgccatgaac
attcccatccccttcaacctcgtcatgccccccatgcctcccccggggtacttcggccag
gccaacggccccgctgcaggccgcggggctcccaaaggaaagaccggccgcggagggcgg
cagaaaaaccgatttgggattcctggcacgagccagtccaacctccccaacagccaggcc
agccaggatgtggtgtcccagcccttctcccagggccccctgacccagggctacatctcc
atgagccagccctcacagatgagtcagcctgggctctcccaaccggaattatcccaggac
agttaccttggtgatgagtttaaatcccagattgacgtggcgctgtcacaggactcaact
taccagggggaacgagcatatcaacatggtggagtgacgggactgtcacagtattag
DBGET
integrated database retrieval system
