Cyanistes caeruleus (blue tit): 111941286
Help
Entry
111941286 CDS
T05602
Name
(RefSeq) probable ATP-dependent RNA helicase YTHDC2 isoform X1
KO
K20099
ATP-dependent RNA helicase YTHDC2 [EC:
5.6.2.6
]
Organism
ccae
Cyanistes caeruleus (blue tit)
Brite
KEGG Orthology (KO) [BR:
ccae00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
ccae03041
]
111941286
Enzymes [BR:
ccae01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
111941286
Spliceosome [BR:
ccae03041
]
Other splicing related proteins
Spliceosome associated proteins (SAPs)
RNA helicase-like proteins
111941286
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
YTH
HA2_C
OB_NTP_bind
Helicase_C
R3H
DEAD
AAA_19
HA2_N
nSTAND3
Ank_2
AAA_22
ATPase
Ank_4
Ank
PhoH
AAA_7
AAA_23
AAA_16
AAA_30
SRP54
T2SSE
UvrD-helicase
ResIII
AAA_29
Sigma54_activat
Motif
Other DBs
NCBI-GeneID:
111941286
NCBI-ProteinID:
XP_023800154
LinkDB
All DBs
Position
Z
AA seq
1363 aa
AA seq
DB search
MEFPSSFTRTERAFVHRLCHSLGLISKSKGKGANRYLTVRKKDGSELKRAVMTCALTPGT
KRAVHTLIQNFPVTNKERTELLPKTERGNAYAVESENKEVNKTSGRLSDGIPQVPVKRGQ
SEFDSFRQSLPVFEKQEEIVKIIKDHKVVLIVGETGSGKTTQIPQFILDDCQKNGTPCRI
FCTQPRRLAALAVAERVAAERREKIGQTVGYQIRLESRVSPKTLVTFCTNGILLRTLMAG
DSTLSTVTHVIVDEVHERDRFSDFLLIKLRDVLQSHTNLKLIISSAALDADLFIRYFGCC
PVIHIQGRPFEVKEMFLEDILRSTGYTNKEMVKYKKEKQQEEKQQNTLTEWCSGQENHSK
LESERPRSVPRATEEGSLLGDDGDTVFNQLTEKDANCLELWLIKEMDSCLSDIWLHKDID
AFAQVFHLILTENVSVDYRHSETSATALMIASGRGFLSQVEQLISMGANIHCRSSNGWMA
VDWAKRFGQTEIVDLLESYSASAGFGNLDESSLVRTSGSDLSAEDRELLTAYHHSFDDEK
VDLDLIMHLLYNICNSCDTGAILIFLPGYDEIVSLRDRILFDDRRFADNAHRYQVFMLHS
NMQTLDQKKVLKSPPPGVRKIILSTNIAETSITVNDVVFVIDSGKVKEKSFDALSCVTML
KMVWISKASAVQRKGRAGRCQPGVCFRLFSRLRFENMLEFQTPELLRMPLQELCLHTKLL
APINCSVVDFLMKAPDPPPALIVKNALQMLKTIDAMDPWEDLTELGYHLTELPVEPHLGK
MVLCAVVLKCLDPVLTIACALAYRDPFVLPTLASQKRAAMLCRKRFTAGTFSDHMVLLRA
FQGWQKARSDGWERAFCEKNFLSQATMQIIVGMRTQLLGQLRASDFIRARGGADIRDVNA
NSENWAVVKAALVAGMYPNLVHVDRGSLVLTAPKEKKVRFHPTSVLSQPQYKKIPPVNGQ
AAAVQALPTDWLIYDEMTRAHRIANIRCCSVVTPVTVALFCGPARLPSNALQASSSCQGD
RVSSDSSDSEVEDRKTSNVSLLKLDEWLHLTMDSEAAGLLLQLRQKWHSLFLRRMRSPSK
SWSQVDEATVRAVVAVLTAEEQSAGLQQPSGIGQRPKPVASEDRLLASTWRSTNTRRSTA
ETEFSDSSNAEKVVMRSTRPILHQPKNYKRKNILHSKQTSDDRSDRSSVKSADSSSFPSP
CASPSSPISGISGKASKSPSPRQNMPVRYFIMKSSNLQNIEISQQKGIWSTTPSNERKLN
GAFWESTMVYLIFSVQGSGHFQGFARMGSSIGCEKSQDWGSPGFGGVFKVEWIRKESIPF
HFAHHLLNPWNDNKKVQISRDGQELEPRVGEQLLQLWDHIPLK
NT seq
4092 nt
NT seq
+upstream
nt +downstream
nt
atggaattcccatcttctttcactagaaccgaaagagcgtttgttcaccggctctgtcat
tctcttgggctgatatcgaaaagtaaaggaaaaggagcaaatcgatacctaactgtaaga
aaaaaggatggatcagaactaaaacgtgcagtaatgacttgtgccttaactcctggtaca
aaacgtgctgttcatactttaattcagaattttcctgtcacaaataaagaaagaacagaa
cttctgccaaagacagaacgaggaaatgcctatgctgttgaatctgaaaacaaagaagtg
aacaagacaagtggacgacttagtgatggtatccctcaagttccagtgaaaagagggcag
tcagagtttgattccttcaggcagtcactcccagtttttgaaaaacaggaagaaattgtt
aaaataataaaggaccataaagttgttttgattgtaggagagactggatcaggaaaaact
actcaaatcccccagtttattcttgatgactgtcaaaaaaatggaactccctgccgtata
ttttgcactcagccaagacgtttggcagcacttgctgtggctgaaagagtggcagcagaa
agaagagaaaagattggccagacggttggttatcagattcgattagaaagcagggtttct
ccaaagacactggtaaccttttgcactaatggcatactgcttcgcacactgatggcagga
gacagcaccctatcaactgtgacacatgtaattgtggatgaagtacatgagagggatagg
ttcagtgacttcttgctaataaaactgagagatgtgttgcaaagccacactaatttaaaa
ctaattatttctagtgctgctctagatgcagatctctttattcggtattttggatgctgt
ccagtaatacacatccaaggaagaccttttgaagtcaaagagatgtttttggaggacatc
ttacgaagtactgggtatacaaacaaagagatggtaaagtacaagaaagagaagcagcaa
gaagaaaaacagcaaaacactcttactgagtggtgttctggtcaagaaaatcatagtaag
ctggaatctgagagaccaagatctgtcccaagggcaactgaagaaggtagtctgttgggt
gatgatggtgacacagtatttaatcaactgactgaaaaggatgcaaattgtcttgaacta
tggttaataaaagaaatggattcttgtctttctgacatctggttgcataaagatatcgat
gcctttgctcaggtgttccatctcattttaactgaaaatgtcagtgttgattataggcac
agtgaaaccagtgcgactgcactaatgattgcttctgggagaggctttttgagtcaagta
gagcaactgatcagtatgggagcaaatatccactgcagatcatctaatggctggatggct
gtggactgggctaagcgctttggacagacagagattgttgacctgctggaatcctacagt
gcttcagcgggttttggaaatctggatgaaagttccttggttcgaacaagtggtagtgac
cttagtgcagaggacagagaactgttgacagcttatcatcacagttttgatgatgaaaaa
gtggatttggacctcattatgcacttactttataacatctgtaatagttgtgacaccgga
gcaattttaatatttcttcctggatatgatgagatagttagcctgagggaccgtattctt
tttgatgacaggagatttgctgacaacgctcacagataccaggttttcatgcttcattca
aatatgcaaactttggatcagaagaaagtgcttaaaagtccacctcctggtgtgcgcaaa
ataattctttctacaaacatagcagaaaccagcataacagtcaatgatgttgtatttgtt
attgattcaggcaaggtgaaagagaagtcttttgatgcactgagttgtgttacaatgcta
aaaatggtgtggatttcaaaagccagtgctgtccagagaaaaggcagggctgggcgctgt
cagcctggagtctgttttcgtctcttcagtaggctccgatttgagaatatgctggaattt
cagactccagaacttttaagaatgccacttcaggagctttgtttacacacaaaacttctg
gctccaattaattgttcagttgttgactttcttatgaaagctcctgatcctccaccagct
ttaattgtgaaaaatgctctacaaatgctcaagactatagatgccatggacccttgggaa
gatctcactgaacttggttatcatctcaccgaattgccagtggagccacaccttggtaaa
atggtgttgtgcgccgttgttttgaagtgcctggatcctgtccttaccattgcttgtgct
cttgcctaccgagacccttttgtgctgcccacgctggcctctcaaaagcgtgcagccatg
ctgtgtaggaagcgttttactgcgggaaccttcagcgaccacatggtgcttctcagggct
ttccaggggtggcagaaggcacgcagtgatggctgggaaagagccttctgtgaaaagaac
ttcctgtctcaagccactatgcaaatcattgtaggaatgagaacacagttgcttggccag
cttagagcctcagattttattagagccagaggaggagctgatattagagatgttaatgct
aactctgaaaactgggctgtagttaaagctgccttagtggccgggatgtatcccaatctt
gtgcacgtagacagagggagcctggttttaactgcaccaaaggagaagaaagtgcgattt
catcctacctctgttcttagtcaacctcagtataaaaagattcccccagtgaatggtcaa
gctgcagctgttcaagcacttcctacagactggctgatatatgatgaaatgacgagagct
cacaggatagcaaacattaggtgctgttctgttgtaacacctgtcactgtggctctcttc
tgtggaccagctaggttaccaagtaatgctttacaggcatcttcatcctgtcaaggagac
agggtatccagtgatagcagtgacagtgaagtggaggaccgaaaaacttctaatgtatca
ctgctgaagctagatgaatggctccaccttacaatggactctgaagctgctggtttgctg
ttgcaactcagacaaaagtggcatagcttatttctgcgtcgtatgcgatctccttctaaa
tcgtggtctcaagttgatgaagcaactgtaagagcagttgtagctgttttaactgctgaa
gaacagtctgcaggtttgcagcaaccttcaggaattggtcagagaccaaaacctgtggct
tctgaagatcgtcttttagcatctacatggagatcaactaacaccaggagaagtacagca
gaaactgagttctctgactcttctaatgctgaaaaagttgtaatgaggtctacacgcccc
atacttcatcagccaaagaattacaaacgaaaaaatattttacactccaaacaaacttca
gatgacaggtcggatcgatcatctgtgaaatctgcagacagcagtagcttccctagcccc
tgtgctagtccatcttctccaatatctggaatatctggaaaggcttccaaatcaccttca
ccaagacagaatatgccagttaggtacttcataatgaaaagtagcaacctacagaacatt
gaaatttctcagcagaagggtatatggtccactactccaagtaatgaacgaaaactgaat
ggagccttttgggaaagcaccatggtttacttaatattttctgttcaagggtctgggcac
ttccagggctttgctagaatgggttcatcaatagggtgtgagaaaagtcaggactgggga
tctcctggatttggaggtgtatttaaggtggagtggatccgaaaagaaagcattcctttt
cattttgcacatcatttgctgaacccttggaatgacaataaaaaagtacaaataagcagg
gatggacaggagctggaaccacgagttggagagcagttgctgcagctttgggaccatatt
cctttgaaatga
DBGET
integrated database retrieval system
