Clavibacter californiensis: FGD68_13760
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Entry
FGD68_13760 CDS
T08592
Symbol
mfd
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
ccaf
Clavibacter californiensis
Pathway
ccaf03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
ccaf00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
FGD68_13760 (mfd)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
ccaf03400
]
FGD68_13760 (mfd)
Enzymes [BR:
ccaf01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
FGD68_13760 (mfd)
DNA repair and recombination proteins [BR:
ccaf03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
FGD68_13760 (mfd)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
UvrB_inter
TRCF
Helicase_C
CarD_TRCF_RID
ResIII
RecG_dom3_C
DUF3638
Motif
Other DBs
NCBI-ProteinID:
UKF79839
LinkDB
All DBs
Position
complement(2872310..2875942)
Genome browser
AA seq
1210 aa
AA seq
DB search
MILQGLIPALSRASTFDDALASASRDADFSLTEGLQGPLLAGLLRQRIQRGIPGCLLVVT
ATGRESEGMRRSLDAVLPDAEILEFPAWETLPHERLSPSAEIVGKRIHALRRMEQWHAAL
GQGAREVPADQVRPLVIVASVRAALQPVADNLTELAPVQLATGSRGHDLSELAVRLVDLA
YSRVDMVTRRGEFAVRGGILDVFPPVSDHPVRVEFFGDEVDQMRPFAVADQRSLEEEITS
VELPPSRELLLSAPVRQRAREMQHEFPNLQQMLAKIAEGIPVEGMESLAPALVDRLVPVT
HYLPVDAAIAVVSPERVSTRAQSLADTNREFLDAAWNAATAGAQAPIDLASGDFLSLGRL
RDARGPRRWWTLSGFQATDVLPEDLGIDEVMTVRIQADPVPSFAGNADGAIEHVRQRLAD
GWSVGVVAQGSGLVERADTVLREAGVPARVVEEFPAEPEPGIAYLLRSAIDAGFEMPEVK
LALLTESEFYGRAAGYDSRQVKKLATRRKNVVDPIQLKAGDHVVHTTHGIGRFVELTQRE
VSSGGRNAVKTRREYLVIEYAPSKRGYPGDKLFVPTDQLDLLSRYVGGEEPALSKMGGSD
WAAAKGKARRAVRDIAVELVKLYSARMASRGHSFPPDTPWQRELEEAFPFMETPDQLTVI
DEVKRDMESPIPMDRLVSGDVGFGKTEIAVRAAFKAVQDGKQVVMLVPTTLLVKQHFETF
SERFAGFPVHLRQLSRFQSEKESRETVKGLEDGSVDVVIGTHRLLTGNIAFKDVGLVIID
EEQRFGVEHKDALKKLKANVDILAMSATPIPRTLEMAVTGIREMSTLATPPEDRHPILTF
VGPNSEKQIAAAIRRELLREGQVFFVHNRVSSINRVASELAELVPEARVAVAHGKMSEAM
LEQVIVDFWERKFDVLVSTTIIETGLDIANANTLIIDRADKYGLSQLHQLRGRVGRGRER
AYAYFLYDADKPLSETAHDRLSTIAANNELGSGMQVALKDLEIRGAGNLLGGEQSGHIQG
VGFDLYLRMIGEAVSTFRGDVAEGQTELRLELPVDAHIPEEYVDSERLRLEAYQKLSTAA
SPTATDDQIDRVIEELSDRYGEPPVEVDNLVRVSRLRRVAQRAGLSEVVAMGPNLRIAPA
DLADSKQVRLQRMYPGSRLFAQTNAVTVPLPKRDGEPLPDAELVDWVRQLLDAVFTVEPA
PAAKESAPKA
NT seq
3633 nt
NT seq
+upstream
nt +downstream
nt
gtgatcctccagggcttgatcccggcgctctcgcgcgcctccacgttcgacgacgccctc
gcatcggcctcccgcgacgccgacttctccctcaccgaggggctccaggggccgctgctc
gcggggctcctgcgccagcgcatccagcgcggcatcccggggtgcctgctcgtcgtcacc
gccaccggtcgggagtccgagggcatgcgccgcagcctcgacgcggtgctgccggacgcc
gagatcctcgagttcccggcgtgggagacgctgccgcacgagcggctcagcccgagcgcc
gagatcgtgggcaagcggatccacgcgctgcgccgcatggagcagtggcatgccgcgctc
ggccagggtgcgcgcgaggtgcccgccgaccaggtgcggccgctcgtcatcgtcgcctcg
gtgcgcgcggccctccagcccgtcgccgacaacctcaccgagctcgcgcccgtgcagctc
gccacgggcagccgcgggcacgacctgtccgagctcgccgtccggctcgtcgacctcgcc
tactcgcgcgtcgacatggtcacgcgccgcggcgagttcgcggtgcgcggcggcatcctc
gacgtgttcccgcccgtctccgaccaccccgtgcgcgtcgagttcttcggcgacgaggtc
gaccagatgcggccgttcgcggtcgccgaccagcgctcgctcgaggaggagatcacctcg
gtcgagctgccaccgagccgcgagctgctgctgagcgcgcccgtgcgccagcgcgctcgc
gagatgcagcacgagttccccaacctgcagcagatgctcgccaagatcgccgagggcatc
ccggtcgagggcatggagtcgctggccccggcgctcgtcgaccggctcgtgccggtcacg
cactacctgccggtcgacgcggccatcgccgtcgtctcgcccgagcgggtgtccacgcgc
gcccagagcctcgccgacaccaaccgcgagttcctcgacgccgcgtggaacgccgcgacc
gcgggcgcgcaggcgcccatcgacctcgcgtccggcgacttcctctcgctcgggcgcctg
cgcgacgcccgcggcccgcgccgctggtggaccctgtcgggcttccaggccaccgacgtg
ctgccggaggacctcgggatcgacgaggtcatgaccgtgcgcatccaggcggatcccgtg
ccgagcttcgcgggcaacgccgacggtgccatcgagcacgtgcgccagcgcctcgccgac
ggctggagcgtgggcgtcgtggcccagggatccggcctcgtcgagcgcgccgacaccgtg
ctccgcgaggcgggcgtcccggcgcgcgtggtcgaggaattccccgcggagcccgagccc
ggcatcgcctacctgctccgctccgccatcgacgcgggcttcgagatgcccgaggtcaag
ctcgcgctcctcacggagagcgagttctacgggcgcgcggccggctacgacagccgccag
gtcaagaagctcgccacccggcggaagaacgtcgtcgaccccatccagctgaaggcgggc
gaccacgtcgtgcacaccacgcacggcatcggcaggttcgtggagctcacgcagcgcgag
gtctcgtcgggcggccgcaacgccgtgaagacccgccgcgagtacctcgtgatcgagtac
gcgccctcgaagcgcggctacccgggcgacaagctcttcgtgcccaccgaccagctcgac
ctgctcagccgctacgtcggcggggaggagcccgccctcagcaagatgggcggcagcgac
tgggccgcggcgaagggcaaggcacgccgggccgtccgcgacatcgcggtcgagctcgtg
aagctctactccgcgcgcatggcgtcgcgcgggcactccttcccgccggacaccccgtgg
cagcgcgagctcgaggaggcgttcccgttcatggagacgccggaccagctcaccgtcatc
gacgaggtcaagcgcgacatggagagccccatccccatggaccgcctggtctcgggcgac
gtcggcttcggcaagaccgagatcgccgtgcgcgccgcgttcaaggccgtgcaggacggc
aagcaggtcgtgatgctcgtgcccacgacgctcctcgtgaagcagcacttcgagaccttc
tcggagcgcttcgccgggttccccgtgcacctgcgccagctcagccgcttccagtcggag
aaggagtcgcgcgagaccgtcaagggcctcgaggacggctcggtcgacgtcgtcatcggc
acgcaccgcctgctcaccggcaacatcgcgttcaaggacgtggggctcgtcatcatcgac
gaggagcagcggttcggcgtcgagcacaaggacgcgctgaagaagctcaaggccaacgtc
gacatcctcgcgatgtctgccacgccgatcccgcgcacgctcgagatggcggtcacgggc
atccgcgagatgtcgacgctcgcgacgccgccggaggaccggcacccgatcctcaccttc
gtgggcccgaacagcgagaagcagatcgcggccgccatccggcgcgagctgctgcgcgag
ggccaggtgttcttcgtccacaaccgcgtgtcgagcatcaaccgggtcgcgtctgagctg
gccgagctggtgcccgaggcgcgcgtcgccgtcgcccacggcaagatgagcgaggcgatg
ctcgagcaggtcatcgtcgacttctgggagcggaagttcgacgtgctcgtgtcgaccacc
atcatcgagaccggcctcgacatcgcgaacgcgaacacgctcatcatcgaccgggccgac
aagtacggcctcagccagctgcaccagctgcgcggtcgcgtcggccgcgggcgggagcgc
gcctacgcgtacttcctctacgacgccgacaagccgctgtccgagacggcgcacgaccgg
ctgtccaccatcgcggcgaacaacgagctgggatccggcatgcaggtcgcgctcaaggac
ctcgagatccgcggcgcaggcaacctcctgggcggcgagcagtccggccacatccagggc
gtgggcttcgacctctacctgcggatgatcggcgaggccgtctccaccttccgcggcgac
gtcgccgagggtcagaccgagctgcggctcgagctgccggtggacgcgcacatccccgag
gagtacgtcgacagcgagcggctgcgcctggaggcgtaccagaagctgtccaccgcggcg
tcgcccacggcgaccgacgaccagatcgaccgggtcatcgaggagctgtccgaccgctac
ggcgaaccgcccgtggaggtcgacaacctcgtgcgggtctcgcgcctgcgtcgcgtggcg
cagcgggccgggctcagcgaggtcgtcgccatggggccgaacctgcgcatcgcgccggcc
gacctcgccgacagcaagcaggtgcgcctgcagcgcatgtacccgggcagccggctgttc
gcgcagaccaacgccgtgaccgtgccgctgcccaagcgcgacggcgagccgctgcccgat
gccgagctcgtcgactgggtgcggcagctgctcgacgccgtgttcacggtggagccggcg
ccggccgcgaaggagtccgcgcccaaggcgtga
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