KEGG   PATHWAY: ccaj00020
Entry
ccaj00020                   Pathway                                
Name
Citrate cycle (TCA cycle) - Cajanus cajan (pigeon pea)
Description
The citrate cycle (TCA cycle, Krebs cycle) is an important aerobic pathway for the final steps of the oxidation of carbohydrates and fatty acids. The cycle starts with acetyl-CoA, the activated form of acetate, derived from glycolysis and pyruvate oxidation for carbohydrates and from beta oxidation of fatty acids. The two-carbon acetyl group in acetyl-CoA is transferred to the four-carbon compound of oxaloacetate to form the six-carbon compound of citrate. In a series of reactions two carbons in citrate are oxidized to CO2 and the reaction pathway supplies NADH for use in the oxidative phosphorylation and other metabolic processes. The pathway also supplies important precursor metabolites including 2-oxoglutarate. At the end of the cycle the remaining four-carbon part is transformed back to oxaloacetate. According to the genome sequence data, many organisms seem to lack genes for the full cycle [MD:M00009], but contain genes for specific segments [MD:M00010 M00011].
Class
Metabolism; Carbohydrate metabolism
Pathway map
ccaj00020  Citrate cycle (TCA cycle)
ccaj00020

Module
ccaj_M00003  Gluconeogenesis, oxaloacetate => fructose-6P [PATH:ccaj00020]
ccaj_M00009  Citrate cycle (TCA cycle, Krebs cycle) [PATH:ccaj00020]
ccaj_M00010  Citrate cycle, first carbon oxidation, oxaloacetate => 2-oxoglutarate [PATH:ccaj00020]
ccaj_M00011  Citrate cycle, second carbon oxidation, 2-oxoglutarate => oxaloacetate [PATH:ccaj00020]
ccaj_M00307  Pyruvate oxidation, pyruvate => acetyl-CoA [PATH:ccaj00020]
Other DBs
GO: 0006099
Organism
Cajanus cajan (pigeon pea) [GN:ccaj]
Gene
109806129  citrate synthase, mitochondrial [KO:K01647] [EC:2.3.3.1]
109788936  citrate synthase, glyoxysomal [KO:K01647] [EC:2.3.3.1]
109814674  citrate synthase, glyoxysomal [KO:K01647] [EC:2.3.3.1]
109808012  ATP-citrate synthase beta chain protein 2 [KO:K01648] [EC:2.3.3.8]
109800662  ATP-citrate synthase alpha chain protein 1 [KO:K01648] [EC:2.3.3.8]
109796743  LOW QUALITY PROTEIN: ATP-citrate synthase alpha chain protein 2 [KO:K01648] [EC:2.3.3.8]
109788001  ATP-citrate synthase beta chain protein 1 [KO:K01648] [EC:2.3.3.8]
109816808  ATP-citrate synthase alpha chain protein 1 [KO:K01648] [EC:2.3.3.8]
109814233  aconitate hydratase, cytoplasmic [KO:K01681] [EC:4.2.1.3]
109800138  aconitate hydratase, cytoplasmic [KO:K01681] [EC:4.2.1.3]
109817391  aconitate hydratase, cytoplasmic [KO:K01681] [EC:4.2.1.3]
109814168  isocitrate dehydrogenase [NADP] [KO:K00031] [EC:1.1.1.42]
109792495  isocitrate dehydrogenase [NADP] [KO:K00031] [EC:1.1.1.42]
109807897  isocitrate dehydrogenase [NADP], chloroplastic/mitochondrial [KO:K00031] [EC:1.1.1.42]
109815389  isocitrate dehydrogenase [NAD] regulatory subunit 1, mitochondrial isoform X1 [KO:K00030] [EC:1.1.1.41]
109800145  isocitrate dehydrogenase [NAD] regulatory subunit 1, mitochondrial isoform X1 [KO:K00030] [EC:1.1.1.41]
109819281  isocitrate dehydrogenase [NAD] regulatory subunit 1, mitochondrial isoform X1 [KO:K00030] [EC:1.1.1.41]
109800726  isocitrate dehydrogenase [NAD] catalytic subunit 5, mitochondrial [KO:K00030] [EC:1.1.1.41]
109812391  2-oxoglutarate dehydrogenase, mitochondrial [KO:K00164] [EC:1.2.4.2]
109815916  2-oxoglutarate dehydrogenase, mitochondrial [KO:K00164] [EC:1.2.4.2]
109818236  dihydrolipoyllysine-residue succinyltransferase component of 2-oxoglutarate dehydrogenase complex 2, mitochondrial [KO:K00658] [EC:2.3.1.61]
109811008  leghemoglobin reductase [KO:K00382] [EC:1.8.1.4]
109808086  dihydrolipoyl dehydrogenase 2, chloroplastic isoform X2 [KO:K00382] [EC:1.8.1.4]
109793046  dihydrolipoyl dehydrogenase 2, chloroplastic isoform X1 [KO:K00382] [EC:1.8.1.4]
109797466  succinate--CoA ligase [ADP-forming] subunit alpha, mitochondrial [KO:K01899] [EC:6.2.1.4 6.2.1.5]
109795414  succinate--CoA ligase [ADP-forming] subunit beta, mitochondrial [KO:K01900] [EC:6.2.1.4 6.2.1.5]
109810493  succinate dehydrogenase [ubiquinone] flavoprotein subunit 1, mitochondrial [KO:K00234] [EC:1.3.5.1]
109800821  succinate dehydrogenase [ubiquinone] flavoprotein subunit, mitochondrial [KO:K00234] [EC:1.3.5.1]
109812842  succinate dehydrogenase [ubiquinone] iron-sulfur subunit 1, mitochondrial [KO:K00235] [EC:1.3.5.1]
109814241  succinate dehydrogenase subunit 3-1, mitochondrial [KO:K00236]
109815179  succinate dehydrogenase subunit 4, mitochondrial [KO:K25801]
109789635  fumarate hydratase 1, mitochondrial [KO:K01679] [EC:4.2.1.2]
109805010  malate dehydrogenase, cytoplasmic [KO:K00025] [EC:1.1.1.37]
109788860  malate dehydrogenase, cytoplasmic [KO:K00025] [EC:1.1.1.37]
109805832  malate dehydrogenase, mitochondrial [KO:K00026] [EC:1.1.1.37]
109809274  malate dehydrogenase, chloroplastic [KO:K00026] [EC:1.1.1.37]
109809827  malate dehydrogenase 2, peroxisomal [KO:K00026] [EC:1.1.1.37]
109801047  malate dehydrogenase, glyoxysomal [KO:K00026] [EC:1.1.1.37]
109806401  phosphoenolpyruvate carboxykinase (ATP) [KO:K01610] [EC:4.1.1.49]
109801060  phosphoenolpyruvate carboxykinase (ATP) [KO:K01610] [EC:4.1.1.49]
109798020  pyruvate dehydrogenase E1 component subunit alpha-3, chloroplastic [KO:K00161] [EC:1.2.4.1]
109809069  pyruvate dehydrogenase E1 component subunit alpha-3, chloroplastic [KO:K00161] [EC:1.2.4.1]
109801411  pyruvate dehydrogenase E1 component subunit alpha, mitochondrial [KO:K00161] [EC:1.2.4.1]
109790789  pyruvate dehydrogenase E1 component subunit alpha, mitochondrial [KO:K00161] [EC:1.2.4.1]
109815293  pyruvate dehydrogenase E1 component subunit beta-2, chloroplastic [KO:K00162] [EC:1.2.4.1]
109802409  pyruvate dehydrogenase E1 component subunit beta, mitochondrial [KO:K00162] [EC:1.2.4.1]
109789741  pyruvate dehydrogenase E1 component subunit beta-3, chloroplastic [KO:K00162] [EC:1.2.4.1]
109797986  dihydrolipoyllysine-residue acetyltransferase component 4 of pyruvate dehydrogenase complex, chloroplastic [KO:K00627] [EC:2.3.1.12]
109789441  dihydrolipoyllysine-residue acetyltransferase component 1 of pyruvate dehydrogenase complex, mitochondrial [KO:K00627] [EC:2.3.1.12]
109802837  dihydrolipoyllysine-residue acetyltransferase component 2 of pyruvate dehydrogenase complex, mitochondrial isoform X1 [KO:K00627] [EC:2.3.1.12]
109792863  dihydrolipoyllysine-residue acetyltransferase component 5 of pyruvate dehydrogenase complex, chloroplastic [KO:K00627] [EC:2.3.1.12]
Compound
C00022  Pyruvate
C00024  Acetyl-CoA
C00026  2-Oxoglutarate
C00036  Oxaloacetate
C00042  Succinate
C00068  Thiamin diphosphate
C00074  Phosphoenolpyruvate
C00091  Succinyl-CoA
C00122  Fumarate
C00149  (S)-Malate
C00158  Citrate
C00311  Isocitrate
C00417  cis-Aconitate
C05125  2-(alpha-Hydroxyethyl)thiamine diphosphate
C05379  Oxalosuccinate
C05381  3-Carboxy-1-hydroxypropyl-ThPP
C15972  Enzyme N6-(lipoyl)lysine
C15973  Enzyme N6-(dihydrolipoyl)lysine
C16254  [Dihydrolipoyllysine-residue succinyltransferase] S-succinyldihydrolipoyllysine
C16255  [Dihydrolipoyllysine-residue acetyltransferase] S-acetyldihydrolipoyllysine
Reference
  Authors
Nishizuka Y (ed).
  Title
[Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1980)
Reference
  Authors
Nishizuka Y, Seyama Y, Ikai A, Ishimura Y, Kawaguchi A (eds).
  Title
[Cellular Functions and Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1997)
Reference
  Authors
Michal G.
  Title
Biochemical Pathways
  Journal
Wiley (1999)
Related
pathway
ccaj00010  Glycolysis / Gluconeogenesis
ccaj00053  Ascorbate and aldarate metabolism
ccaj00061  Fatty acid biosynthesis
ccaj00062  Fatty acid elongation
ccaj00071  Fatty acid degradation
ccaj00190  Oxidative phosphorylation
ccaj00220  Arginine biosynthesis
ccaj00250  Alanine, aspartate and glutamate metabolism
ccaj00280  Valine, leucine and isoleucine degradation
ccaj00350  Tyrosine metabolism
ccaj00470  D-Amino acid metabolism
ccaj00630  Glyoxylate and dicarboxylate metabolism
KO pathway
ko00020   
LinkDB

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