Cajanus cajan (pigeon pea): 109796803
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Entry
109796803 CDS
T04868
Name
(RefSeq) general transcription factor IIH subunit 2
KO
K03142
transcription initiation factor TFIIH subunit 2
Organism
ccaj
Cajanus cajan (pigeon pea)
Pathway
ccaj03022
Basal transcription factors
ccaj03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
ccaj00001
]
09120 Genetic Information Processing
09121 Transcription
03022 Basal transcription factors
109796803
09124 Replication and repair
03420 Nucleotide excision repair
109796803
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
ccaj03021
]
109796803
03400 DNA repair and recombination proteins [BR:
ccaj03400
]
109796803
Transcription machinery [BR:
ccaj03021
]
Eukaryotic type
RNA polymerase II system
Basal transcription factors
TFIIH
109796803
DNA repair and recombination proteins [BR:
ccaj03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TFIIH complex
109796803
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Ssl1
C1_4
VWA_2
VWA
IBR
Motif
Other DBs
NCBI-GeneID:
109796803
NCBI-ProteinID:
XP_020212198
LinkDB
All DBs
Position
3:13825319..13829002
Genome browser
AA seq
418 aa
AA seq
DB search
MSNAAERPVNGDAEDDDEDEGGDLEAWERTYAEDRSWEALQEDESGLLRPIDNTAIYHAQ
YRRRLRNLASKAATARIQKGLIRYLYIVVDLSKAASERDFRPSRMAVIGKQVEAFIREFF
DQNPLSHVGLVTIKDGIAHCLTELGGSPESHIKALMGKLECSGDASLQNALELVLGYLNQ
IPSYGHREVLVLYSALSTCDPGDLMETIQKCKKSKIRCSVIGLAAEMFVCKHLCQETGGT
YSVALDESHFKELILEHAPPPPAIAEYATANLIKMGFPQRSAEGSVAICTCHEEAKTGGG
YTCPRCKVRVCELPTECRICGLTLISSPHLARSYHHLFPIVMFDEVSPSSQNDPSFSFSN
TCFGCQQSLNSQGNKPGLSVICPKCKQQFCLDCDIYIHESLHNCPGCESSRHSKSVTA
NT seq
1257 nt
NT seq
+upstream
nt +downstream
nt
atgagtaatgctgctgaaagaccggttaatggagacgcggaggatgatgatgaggatgag
ggtggagaccttgaagcctgggagagaacttatgcagaagataggtcgtgggaggctttg
caagaggatgaatctggacttcttcgccccatagataatacagccatttaccatgctcag
taccgcaggcgccttcgtaatcttgcttccaaagcagctactgcacggattcagaagggg
cttatacgatacctgtacattgtcgttgacctctccaaggcagcttcagagagagacttt
cgacctagtaggatggctgtgattgggaaacaggttgaggcatttatcagggaatttttt
gatcagaatccacttagtcatgttggtctggtgactataaaagatgggattgctcattgt
ttaacagaacttggtggcagtcctgagtctcacattaaagctttgatgggtaaactggaa
tgctcaggtgatgcctccttacaaaatgcactggagcttgttcttggatatctaaatcaa
atcccatcatatggtcatcgagaagttctggtcttatattcagctctaagtacatgcgat
cctggtgatctcatggaaaccatccagaaatgcaaaaagagtaaaataaggtgctcagtc
attggtcttgctgctgaaatgtttgtatgcaaacatctctgccaggaaaccggagggact
tattctgttgcactagatgagtcccactttaaagagttaatcctagagcatgcaccacct
cctccagcaatagcagagtatgctacagctaatttaattaagatgggtttcccacagcga
tcagctgagggctctgtcgcaatatgtacatgtcatgaagaggccaagaccggaggggga
tacacttgtccaagatgcaaagttcgtgtctgtgagcttcccactgaatgtcgtatctgt
ggattgacccttatttcttcaccccatttggcaagatcatatcatcatctatttcctata
gtaatgtttgatgaggtctctccgtcatctcaaaatgatccaagcttcagtttttccaac
acttgttttggttgtcaacaaagtcttaatagtcagggaaacaagcctggactttctgtc
atttgcccaaaatgcaaacaacaattctgccttgattgtgacatctacattcatgagagc
ttacataactgcccaggctgtgagagttccaggcattctaagtctgtaactgcttga
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