Cajanus cajan (pigeon pea): 109810860
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Entry
109810860 CDS
T04868
Name
(RefSeq) DEAD-box ATP-dependent RNA helicase 42
KO
K12811
ATP-dependent RNA helicase DDX46/PRP5 [EC:
5.6.2.7
]
Organism
ccaj
Cajanus cajan (pigeon pea)
Pathway
ccaj03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
ccaj00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
109810860
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
ccaj03041
]
109810860
Enzymes [BR:
ccaj01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
109810860
Spliceosome [BR:
ccaj03041
]
Complex A
U2 snRNP components
U2 related factors
109810860
Complex B
109810860
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
Motif
Other DBs
NCBI-GeneID:
109810860
NCBI-ProteinID:
XP_020230029
LinkDB
All DBs
Position
Unknown
AA seq
1139 aa
AA seq
DB search
MDEGKHRSRKEDYEVKDGDSKRSHRDRDRDRTKDKNDGRHRDREKKDRDSRRHERERSTD
SEDRHDRDREKRRDKDKDRAHVQDVDRERVRDKKRERDREDRERERTDRVREKEREKERK
EEKERIREREREREREREKRDHEREKEKERERGRRTREREKRREVDSDYSDGESRERDRK
RHRKEDGDYKKRERERSVGKQNRQTEEREGSPRKKSGGDDSDTKDEERKPTREEEMEDEQ
KRLDEEMEKRRRRVQEWQELRRKKEEAEREKHGEASANEPESGKTWTLEGESDDEEGPGN
GKHDTSMDVDEDDKPADKGPKDAMVVDTDNGTVASDLQDGSAGAPADEEIDPLDAFMNSM
VLPEVEKLNNAVTSSLSDKAVDIKSKDKGNEQSRGAQSRKGSNKSIGRIIPGEESESDYA
DDEVERDPLDEDDDEFMKRVKKTKAEKLSLVDHSKIDYEPFKKNFYIEVKEISKITSEEA
AVYRKQLELKIHGKDVPKPIKSWHQTGLGSKILETIKKMNFEKPMPIQAQALPVIMSGRD
CIGIAKTGSGKTLAFVLPMLRHIKDQPPVVAGDGPIGLIMAPTRELVQQIHSDIKKFAKV
MGIRCVPVYGGSGVAQQISELKRGAEIVVCTPGRMIDILCTSSGKITNLRRVTYLVMDEA
DRMFDMGFEPQITRIVQNIRPDRQTVLFSATFPRQVEILARKVLNKPVEIQVGGRSVVNK
DITQLVEVRPDNERFLRLLEILGEWYEKGKILIFVHSQEKCDSLFKDLLRHGYPCLSLHG
AKDQTDRESTISDFKSNVCNLLVATSVAARGLDVKELELVINFDVPNHYEDYVHRVGRTG
RAGRKGCAITFISEEEARYAPDLLKALELSEQIVPNDLKALADSFMAKVNQGLEQAHGTG
YGGSGFKFNEEEDEVRRAAKKAQAKEYGFEEDKSDSEDEDEGIRKAGGDISQHPALAQIL
AATKVNAPALPTPISAAQLMTNGGLPVSLPAVLGLQTATVLPGTGLPLAANDGAARAALA
AINLQHNLAKIQSEALPEHYEAELEINDFPQNARWKVTHKETLGPISEWTGAAITTRGQF
FPPGKIPGPGERKLYLFIEGPTEQSVKRAKAELKRVLEDITNQALQLPGGTQPGKYSVV
NT seq
3420 nt
NT seq
+upstream
nt +downstream
nt
atggatgagggaaaacatagatcaaggaaagaagattatgaggtgaaagatggggattct
aagaggagtcatcgggatcgtgaccgtgatagaactaaggataaaaacgatgggaggcac
agggatagggagaagaaggatcgagactcccggagacatgagagagagaggagtaccgat
tctgaagacaggcatgatagggacagggagaagcgcagagataaagataaggatagggca
catgttcaggatgtggacagagaaagagttcgagacaagaaaagggaaagggatagggaa
gacagggaaagggagaggacagatagagtaagggagaaagaaagagagaaggaaagaaaa
gaggagaaggagaggatcagagagagagaacgagaaagggaaagggaaagggaaaagagg
gatcatgagagagagaaggaaaaggaaagagaaagggggaggagaacacgtgagagggag
aagcgcagggaagttgacagtgattacagtgatggtgaatccagggagagagatagaaag
cggcataggaaggaggatggtgattacaagaagagagagagggaaaggagtgttggcaag
caaaataggcaaactgaggaacgtgaaggaagcccgagaaaaaagagtggcggagatgat
tcagatacaaaagatgaagagagaaaacctacccgtgaagaggagatggaggatgaacaa
aagaggttggatgaagaaatggaaaagagaaggaggagagttcaagagtggcaagagcta
aggaggaagaaggaagaagcagaaagagaaaagcatggtgaagcaagtgctaatgaacct
gagtctggaaagacctggactcttgaaggggaatctgatgacgaagaaggtccaggtaat
gggaagcatgatacaagtatggatgtagatgaagatgacaagcctgctgataagggacct
aaggatgcaatggtggtagacactgataatgggacagttgcatctgatttacaggatgga
tctgctggtgctcctgcagatgaggaaatagatccattggacgctttcatgaattctatg
gttctacctgaagttgagaagctaaacaatgctgtgacatcgtcactttctgataaagct
gttgacataaaatccaaagataaggggaatgagcaaagtcgtggtgcacagtcaaggaaa
ggttcgaataagtctattggcagaataattcctggtgaagagtctgagtctgattatgca
gatgatgaagttgagagggatccattggatgaagatgatgatgaattcatgaaaagagtg
aagaagacaaaagctgagaagctttctttagttgaccactcaaagattgactatgaacca
ttcaagaaaaacttttatattgaagtgaaggagatctctaagataacttctgaagaagct
gcagtatacaggaagcagttggagttgaagatacatggaaaggatgtgccaaagcctata
aaatcgtggcaccagactggacttggtagcaaaattttggagacaataaagaagatgaac
tttgaaaagccgatgcctattcaagctcaagcactccctgtaatcatgagtggtcgagat
tgcatagggattgctaagactgggtcaggcaaaacacttgcttttgttctgccaatgctg
aggcatatcaaggatcagccaccagttgttgccggagatggacctattgggcttattatg
gctcctacaagggagcttgttcaacagattcacagtgatataaaaaaatttgctaaggta
atgggtatcaggtgcgtgcctgtgtatggaggctctggtgttgctcaacaaattagtgag
ttgaaacgcggtgctgagatagttgtttgtactccaggtaggatgattgacatactatgc
accagtagtggaaaaataactaacttgcgtagagtcacttatcttgtcatggatgaggct
gatcggatgtttgacatgggttttgaacctcaaatcacacgaattgttcagaacattcgt
cccgatcgtcaaacggttttgttctctgctactttcccccgtcaggttgaaattctggct
cgtaaggttttgaataaacctgttgaaatacaagttggtgggaggagtgttgtgaacaaa
gacataacccagctagttgaggtgaggccagataatgaaaggttccttagactcttagaa
atattgggggaatggtacgagaaaggaaagattttgatatttgtacactcacaggagaaa
tgtgatagtttgttcaaggatttgctcaggcatggttatccatgcctttcacttcacggg
gctaaggaccagactgatcgtgaatccacaatatctgattttaagagcaacgtttgcaat
ttattggttgcaacaagtgttgctgccaggggattagatgttaaggagcttgaattggtg
atcaattttgatgttcctaaccactatgaagattatgtacatcgtgttgggcgcaccgga
cgagccggccgaaagggttgtgccattacatttatttctgaggaagaggcaagatatgca
cctgatctgctgaaagccttggaactgtctgagcagattgttcccaatgatctgaaagct
cttgctgatagctttatggcaaaagtgaaccaaggactggagcaagcccatgggactggt
tatggaggcagtggctttaaatttaatgaagaggaagatgaggtgagaagagcagcaaag
aaagcacaagccaaggaatatgggtttgaagaagacaagtcagattctgaagatgaagat
gaaggtattaggaaggctggaggtgatatctcacagcatcctgctcttgctcagattctc
gctgccactaaagtgaatgctcctgcattgcctactcccatctccgctgctcagttgatg
acaaatggtggactacctgtttctttgccagctgttcttggtctccagactgccacagtc
ttgcctgggacagggctaccccttgctgcaaatgatggggccgctcgagcagcattagct
gctataaacttgcagcacaacttagcaaaaatacaatcagaagcattaccagagcattat
gaggccgagttggaaataaatgatttcccccagaatgctcgatggaaggttacacacaag
gaaactttaggtcctatttctgaatggactggagctgccattaccaccagggggcagttt
ttcccacctggcaaaatcccaggacctggggaacgcaaactctacttattcattgaaggt
cctactgagcagtctgttaaaagagctaaagctgaattgaagcgtgtattggaagacatc
acaaatcaggctttgcaacttcctggtggaactcaacctggcaaatactctgtcgtgtaa
DBGET
integrated database retrieval system
